Browse Element(s) Details


Os.49463.1.S1_at

Description gb:AK101470.1
DB_XREF= gi:32986679
TID=Os.49463.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49463 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033040K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033040K01, full insert sequence.
FL= gb:AK101470.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4606011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46030Os.52694.1.S1_at11/116+27903555..27905637expressed protein
LOC_Os06g46030OsAffx.21629.2.S1_x_at1/116+27903555..27905637expressed protein
LOC_Os06g46040NANA6+27907808..27908884retrotransposon protein, putative, unclassified
LOC_Os06g46050OsAffx.15945.1.S1_at11/116+27914460..27915050hypothetical protein
LOC_Os06g46060Os.49463.1.S1_at11/116+27922527..27925282expressed protein
LOC_Os06g46060OsAffx.15946.1.S1_x_at2/116+27922527..27925282expressed protein
LOC_Os06g46070OsAffx.5122.1.S1_at10/116+27933526..27934660hypothetical protein
LOC_Os06g46080OsAffx.28128.1.S1_at11/116+27940760..27941132hypothetical protein
LOC_Os06g46090OsAffx.28129.1.S1_x_at10/116+27944401..27945106expressed protein
LOC_Os06g46090OsAffx.28129.1.S1_at10/116+27944401..27945106expressed protein
LOC_Os06g46100OsAffx.28130.1.S1_at11/116+27947244..27947888hypothetical protein
LOC_Os06g46100OsAffx.27736.1.S1_at2/116+27947244..27947888hypothetical protein
LOC_Os06g46110OsAffx.5123.1.S1_at11/116+27948954..27949217hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49463.1.S1_at--281--8651Chr06:27922992..27923016 (25 bp)
TGTGGAGGAGAACACCATTCCGGAT
LOC_Os06g46060
Os.49463.1.S1_at--653--9391Chr06:27922900..27922924 (25 bp)
TCGTCAGTGAACCAGTGGCGGTCTT
LOC_Os06g46060
Os.49463.1.S1_at--165--4451Chr06:27922871..27922895 (25 bp)
GCCTTCGTGCTTCTGTTGCTTGGTT
LOC_Os06g46060
Os.49463.1.S1_at--776--7911Chr06:27922850..27922874 (25 bp)
GGTTGTGGCTTTCTTCACGTCGCCA
LOC_Os06g46060
Os.49463.1.S1_at--1117--2651Chr06:27922811..27922835 (25 bp)
AAGCCCAAGATGCTCTGATCCACGG
LOC_Os06g46060
Os.49463.1.S1_at--893--5811Chr06:27922795..27922819 (25 bp)
GATCCACGGCGATACTAAGAATTTT
LOC_Os06g46060
Os.49463.1.S1_at--477--7691Chr06:27922770..27922794 (25 bp)
GGGTATTGTGTGTTCATAGGTTTCA
LOC_Os06g46060
Os.49463.1.S1_at--564--10431Chr06:27922713..27922737 (25 bp)
TTATGCGTGTATGTTATGTGCTCCA
LOC_Os06g46060
Os.49463.1.S1_at--816--6971Chr06:27922633..27922657 (25 bp)
GTACCTTACTGCCTTGTATACATAG
LOC_Os06g46060
Os.49463.1.S1_at--401--3111Chr06:27922580..27922604 (25 bp)
AATTAAAATTCATCTGGGCCTCCTG
LOC_Os06g46060
Os.49463.1.S1_at--1005--471Chr06:27922569..27922593 (25 bp)
ATCTGGGCCTCCTGATATATCATTT
LOC_Os06g46060
Target Sequence 
TGTGGAGGAGAACACCATTCCGGATGGGGGCAGTCTAGCCTGGAGCGGCTACGCCATGATTGTCTTATCAGTGTTGGCCT
TGTGGTCTGGGTTCGTCAGTGAACCAGTGGCGGTCTTCCTGGCCTTCGTGCTTCTGTTGCTTGGTTGTGGCTTTCTTCAC
GTCGCCATGCTCGCACCGTCCAAGCCCAAGATGCTCTGATCCACGGCGATACTAAGAATTTTGGGTATTGTGTGTTCATA
GGTTTCACAGAAGGATATGAAAACAAAACAAAAAAAAGGTTATGCGTGTATGTTATGTGCTCCATAGAACACCAATCATG
AATGCATATATTTATAGGAGTATTTGGGAACTATGTACAGTACCTTACTGCCTTGTATACATAGANGATAGAACCTTGTG
TGAAATATGTGTAATTAAAATTCATCTGGGCCTCCTGATATATCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis