Browse Element(s) Details


OsAffx.15945.1.S1_at

Description tigr:9634.m04478
TID=OsAffx.15945.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4605011/11hypothetical protein
LOC_Os08g231001/11cyclase family protein, putative, expressed
LOC_Os11g064801/11hypothetical protein
LOC_Os01g223521/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46030Os.52694.1.S1_at11/116+27903555..27905637expressed protein
LOC_Os06g46030OsAffx.21629.2.S1_x_at1/116+27903555..27905637expressed protein
LOC_Os06g46040NANA6+27907808..27908884retrotransposon protein, putative, unclassified
LOC_Os06g46050OsAffx.15945.1.S1_at11/116+27914460..27915050hypothetical protein
LOC_Os06g46060Os.49463.1.S1_at11/116+27922527..27925282expressed protein
LOC_Os06g46060OsAffx.15946.1.S1_x_at2/116+27922527..27925282expressed protein
LOC_Os06g46070OsAffx.5122.1.S1_at10/116+27933526..27934660hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15945.1.S1_at--1130--1851Chr06:27914983..27915007 (25 bp)
ACGACGATGCAAACCCGCGACGACG
LOC_Os06g46050
OsAffx.15945.1.S1_at--646--4671Chr06:27914930..27914954 (25 bp)
GCGGGCGGCGATAACCGCGTCGGTG
LOC_Os06g46050
OsAffx.15945.1.S1_at--834--6133Chr05:16133455..16133474 (20 bp)
GAGGGGACCACACCTACAAATCCAA
NONE
OsAffx.15945.1.S1_at--375--317Chr12:24201071..24201095 (25 bp)
ATTGGATCACCAAATCCACCTTCAT
NONE
OsAffx.15945.1.S1_at--272--85718Chr12:24201073..24201096 (24 bp)
TGGATCACCAAATCCACCTTCATCT
NONE
OsAffx.15945.1.S1_at--507--4312Chr02:21809214..21809233 (20 bp)
CCTTCATCTCTACAACCAAACAAAA
NONE
OsAffx.15945.1.S1_at--945--2435Chr07:7519057..7519081 (25 bp)
AAAATGGATCGCCATATCCAACAAA
NONE
OsAffx.15945.1.S1_at--146--85729Chr12:24201151..24201175 (25 bp)
TGGATCGCCATATCCAACAAAATAT
NONE
OsAffx.15945.1.S1_at--365--10112Chr06:27914500..27914524 (25 bp)
TATGGATCGCCATATCCCATCTAAC
LOC_Os06g46050
OsAffx.15945.1.S1_at--198--531Chr06:27914495..27914519 (25 bp)
ATCGCCATATCCCATCTAACCTTGG
LOC_Os06g46050
OsAffx.15945.1.S1_at--943--3551Chr06:27914490..27914514 (25 bp)
CATATCCCATCTAACCTTGGCCGTG
LOC_Os06g46050
Target Sequence 
ACGACGATGCAAACCCGCGACGACGACGACGCGAACCCGATGACGATGACGGTGCGGGCGGCGATAACCGCGTCGGTGGG
AGGCGGCGGCCAGTGGGAGGAGGCGGCCGCTGGCGGGAGGAGGCGCGAGCTCGGAGACGCCTGCCGGTGACGACGACGGT
GCGGATGGCGAGAGCCACGTCGGCGGGGGGCGGCTCGGCGGGAGGAGGCGGCGGTATGAGAGGGGACCACACCTACAAAT
CCAACCTACTCCCTCCAACCAAACAGAAAATTGGATCACCAAATCCACCTTCATCTCTACAACCAAACAAAAAATGGATC
GCCATATCCAACAAAATATGGATCGCCATATCCCATCTAACCTTGGCCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis