Browse Element(s) Details


OsAffx.5127.1.S1_at

Description tigr:9634.m04493
TID=OsAffx.5127.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein F19P19.16 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4624011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46170Os.54287.1.S1_at2/116+27980348..27983830hypothetical protein
LOC_Os06g46180Os.1709.1.S1_x_at7/116+27984428..27990319retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g46190OsAffx.5124.1.S1_s_at11/116+27993850..27994182hypothetical protein
LOC_Os06g46200OsAffx.5125.1.S1_at11/116+27997215..27998294hypothetical protein
LOC_Os06g46210OsAffx.5126.1.S1_at11/116+27998530..27998847hypothetical protein
LOC_Os06g46230OsAffx.15948.1.S1_at11/116+28002807..28003325hypothetical protein
LOC_Os06g46230OsAffx.15948.1.S1_x_at11/116+28002807..28003325hypothetical protein
LOC_Os06g46240Os.27277.2.S1_s_at11/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46240OsAffx.5127.1.S1_at11/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46240Os.27277.1.A1_at11/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46240OsAffx.3017.1.S1_x_at1/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46250Os.51104.2.S1_at11/116+28017187..28018817expressed protein
LOC_Os06g46260OsAffx.5128.1.S1_at10/116+28019726..28020807hypothetical protein
LOC_Os06g46270Os.51762.1.S1_at11/116+28036571..28040883NAC-domain containing protein 21/22, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5127.1.S1_at--1130--2292Chr06:28013365..28013385 (21 bp)
AAATGGTGATTCTTAATGCCTCGGA
LOC_Os06g46240
OsAffx.5127.1.S1_at--965--5912Chr06:28013387..28013572 (25 bp)
GAGCATTGCCGGGAGTCCAAATTTG
LOC_Os06g46240
OsAffx.5127.1.S1_at--20--9771Chr06:28013589..28013613 (25 bp)
TAAAGCTCGTTTCTTGTACGGGAAG
LOC_Os06g46240
OsAffx.5127.1.S1_at--795--6531Chr06:28013624..28013648 (25 bp)
GATTTAGATTGCGTACCTCGGGTAT
LOC_Os06g46240
OsAffx.5127.1.S1_at--198--7071Chr06:28015189..28015213 (25 bp)
GTAATTTATAGCAGGTCGTCAGGAG
LOC_Os06g46240
OsAffx.5127.1.S1_at--798--5331Chr06:28015238..28015262 (25 bp)
GAAGTCACGACGCATTGGCAGCCGT
LOC_Os06g46240
OsAffx.5127.1.S1_at--229--31Chr06:28015251..28015275 (25 bp)
ATTGGCAGCCGTCAGATGGCCGTCA
LOC_Os06g46240
OsAffx.5127.1.S1_at--831--871Chr06:28015266..28015290 (25 bp)
ATGGCCGTCACTTCCAGGCTTGGAG
LOC_Os06g46240
OsAffx.5127.1.S1_at--789--3611Chr06:28015284..28015308 (25 bp)
CTTGGAGTCGCATCAGACGGCGCAG
LOC_Os06g46240
OsAffx.5127.1.S1_at--746--4531Chr06:28016288..28016312 (25 bp)
GCCCGAGACGATGCAACGCGAGCAG
LOC_Os06g46240
OsAffx.5127.1.S1_at--815--3371Chr06:28016353..28016377 (25 bp)
CACCACGACGATGGAGATCCGGAAT
LOC_Os06g46240
Target Sequence 
AAATGGTGATTCTTAATGCCTCGGAAGAGCATTGCCGGGAGTCCAAATTTGATACAATTGGAGTTTGTAAAGCTCGTTTC
TTGTACGGGAAGGTTTCTAGGGGATTTAGATTGCGTACCTCGGGTATAAACAAAGAGGGAGGCCCAAGAGGGGGTACAGT
AATTTATAGCAGGTCGTCAGGAGGGCTGCCTCCCTGGTGTGGTGCAGGAAGTCACGACGCATTGGCAGCCGTCAGATGGC
CGTCACTTCCAGGCTTGGAGTCGCATCAGACGGCGCAGGTGATAAGGCGAGGCGCAGGGCGCAGAGGCGAGGGGAGAGAC
GTAAACGTAACCAAGCAAAGCAACGCGCCCATGCGGCCGCCCGAGACGATGCAACGCGAGCAGCCGCAGAGCAGAGCAAG
AGCCAACGGTAGGAAATGGCCACCACCACGACGATGGAGATCCGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis