Browse Element(s) Details


OsAffx.5128.1.S1_at

Description tigr:9634.m04495
TID=OsAffx.5128.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4626010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46200OsAffx.5125.1.S1_at11/116+27997215..27998294hypothetical protein
LOC_Os06g46210OsAffx.5126.1.S1_at11/116+27998530..27998847hypothetical protein
LOC_Os06g46230OsAffx.15948.1.S1_at11/116+28002807..28003325hypothetical protein
LOC_Os06g46230OsAffx.15948.1.S1_x_at11/116+28002807..28003325hypothetical protein
LOC_Os06g46240Os.27277.2.S1_s_at11/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46240OsAffx.5127.1.S1_at11/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46240Os.27277.1.A1_at11/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46240OsAffx.3017.1.S1_x_at1/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46250Os.51104.2.S1_at11/116+28017187..28018817expressed protein
LOC_Os06g46260OsAffx.5128.1.S1_at10/116+28019726..28020807hypothetical protein
LOC_Os06g46270Os.51762.1.S1_at11/116+28036571..28040883NAC-domain containing protein 21/22, putative, expressed
LOC_Os06g46284NANA6+28044481..28053035Alpha-glucosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5128.1.S1_at--538--1251Chr06:28020747..28020771 (25 bp)
AGATTCCGCCTATCTACACACACGT
LOC_Os06g46260
OsAffx.5128.1.S1_at--923--8251Chr06:28020552..28020740 (25 bp)
GGCAGCCTGGTCTTTTCGAGAGAGT
LOC_Os06g46260
OsAffx.5128.1.S1_at--411--10311Chr06:28020539..28020559 (21 bp)
TTTCGAGAGAGTACATCGCCACCGC
LOC_Os06g46260
OsAffx.5128.1.S1_at--352--471Chr06:28020490..28020514 (25 bp)
ATCTCCCACTGTTCATCGTCTTGGT
LOC_Os06g46260
OsAffx.5128.1.S1_at--366--8791Chr06:28020481..28020505 (25 bp)
TGTTCATCGTCTTGGTCCCCGGCAA
LOC_Os06g46260
OsAffx.5128.1.S1_at--767--10531Chr06:28020470..28020494 (25 bp)
TTGGTCCCCGGCAACGATGACGGCC
LOC_Os06g46260
OsAffx.5128.1.S1_at--221--1891NONE
ACGATGACGGCCTTTGCGCGGTTGC
NONE
OsAffx.5128.1.S1_at--226--4691Chr06:28019804..28019828 (25 bp)
GCGGTTGCCTCCAAAAGTTGCGAGT
LOC_Os06g46260
OsAffx.5128.1.S1_at--1151--4611Chr06:28019785..28019809 (25 bp)
GCGAGTAACACCAATGCAGAGCTAA
LOC_Os06g46260
OsAffx.5128.1.S1_at--773--3011Chr06:28019773..28019797 (25 bp)
AATGCAGAGCTAAGCTCCCCGCCAA
LOC_Os06g46260
OsAffx.5128.1.S1_at--662--9291Chr06:28019758..28019782 (25 bp)
TCCCCGCCAAAGCTTCTGAAATGTG
LOC_Os06g46260
Target Sequence 
AGATTCCGCCTATCTACACACACGTACCAGGGGCAGCCTGGTCTTTTCGAGAGAGTACATCGCCACCGCCGCCATGGTCC
CAGCCGGCCGGCGATCTCCCACTGTTCATCGTCTTGGTCCCCGGCAACGATGACGGCCTTTGCGCGGTTGCCTCCAAAAG
TTGCGAGTAACACCAATGCAGAGCTAAGCTCCCCGCCAAAGCTTCTGAAATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis