Browse Element(s) Details


Os.27277.2.S1_s_at

Description gb:CB630068
DB_XREF= gi:29625057
DB_XREF=OSIIEb06M16.f
CLONE=OSIIEb06M16
TID=Os.27277.2
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27277 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_171934.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4624011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46170Os.54287.1.S1_at2/116+27980348..27983830hypothetical protein
LOC_Os06g46180Os.1709.1.S1_x_at7/116+27984428..27990319retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g46190OsAffx.5124.1.S1_s_at11/116+27993850..27994182hypothetical protein
LOC_Os06g46200OsAffx.5125.1.S1_at11/116+27997215..27998294hypothetical protein
LOC_Os06g46210OsAffx.5126.1.S1_at11/116+27998530..27998847hypothetical protein
LOC_Os06g46230OsAffx.15948.1.S1_at11/116+28002807..28003325hypothetical protein
LOC_Os06g46230OsAffx.15948.1.S1_x_at11/116+28002807..28003325hypothetical protein
LOC_Os06g46240Os.27277.2.S1_s_at11/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46240OsAffx.5127.1.S1_at11/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46240Os.27277.1.A1_at11/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46240OsAffx.3017.1.S1_x_at1/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46250Os.51104.2.S1_at11/116+28017187..28018817expressed protein
LOC_Os06g46260OsAffx.5128.1.S1_at10/116+28019726..28020807hypothetical protein
LOC_Os06g46270Os.51762.1.S1_at11/116+28036571..28040883NAC-domain containing protein 21/22, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27277.2.S1_s_at--1024--9691Chr06:28006766..28006790 (25 bp)
TCAAAGCAGCATCAGCCTTTCTTGG
LOC_Os06g46240
Os.27277.2.S1_s_at--817--10751Chr06:28006795..28006819 (25 bp)
TTGACCAATGAGATGCTGCGGCTTC
LOC_Os06g46240
Os.27277.2.S1_s_at--309--5291Chr06:28007021..28007045 (25 bp)
GAATGTGTCGGTTCTGATCCAAGCA
LOC_Os06g46240
Os.27277.2.S1_s_at--483--931Chr06:28007078..28007102 (25 bp)
AGGAAATTTAGCTCGCCAATACCCG
LOC_Os06g46240
Os.27277.2.S1_s_at--692--1351Chr06:28007108..28007132 (25 bp)
AGAGATCGTTACATGCCTCGCGAGT
LOC_Os06g46240
Os.27277.2.S1_s_at--420--9331Chr06:28007125..28007149 (25 bp)
TCGCGAGTCAGCTTTCTGCAAACCA
LOC_Os06g46240
Os.27277.2.S1_s_at--749--3691Chr06:28007155..28007179 (25 bp)
CTATAGCTGTCTCATCTGCAAGTAC
LOC_Os06g46240
Os.27277.2.S1_s_at--1059--8971Chr06:28007182..28007206 (25 bp)
TGAACTGCATACTGAACACCCTAGC
LOC_Os06g46240
Os.27277.2.S1_s_at--196--3211Chr06:28007269..28007293 (25 bp)
CAAGTGTCATTGGAGCTCTGCAGAA
LOC_Os06g46240
Os.27277.2.S1_s_at--664--7511Chr06:28007360..28007384 (25 bp)
GTGGATTTGGCCTTCTTCGAGATAC
LOC_Os06g46240
Os.27277.2.S1_s_at--971--7991Chr06:28007447..28007471 (25 bp)
GGATGTTGCTGTTAGAGTCCTCAAG
LOC_Os06g46240
Target Sequence 
TCAAAGCAGCATCAGCCTTTCTTGGCTGTTTGACCAATGAGATGCTGCGGCTTCCTCCTATAAAGGAGTCAATTTCGGAT
ATACTCATAGCACTGGAAGGTATTCTTCAGTCCAAGAATGTGTCGGTTCTGATCCAAGCAACTGATGTTAGCTTGAAGTT
AGTTTCCAGTGTAGGAAATTTAGCTCGCCAATACCCGGTTTTAGAGATCGTTACATGCCTCGCGAGTCAGCTTTCTGCAA
ACCAGATAACTATAGCTGTCTCATCTGCAAGTACATTGAACTGCATACTGAACACCCTAGCAACAGCGAGAAGTTCGATT
CATGCAGAAATTTGGGAAGCTTTGGAGAAAACCGATGCAGTTACAAGTGTCATTGGAGCTCTGCAGAATTACTCCCCTGA
TGTCCATCCATTAAACTATCTGATGGAAATGATGTCTCTGCTAAGAATTATACTGTGGATTTGGCCTTCTTCGAGATACC
ATGTATGGAGTAACTGCAACTTGATGGGGAAGCTAGCACNATACTGTGTTGCCTCTGAAATGGATGTTGCTGTTAGAGTC
CTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27277.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis