Browse Element(s) Details


Os.51762.1.S1_at

Description gb:AK063648.1
DB_XREF= gi:32973666
TID=Os.51762.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51762 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-A03, full insert sequence.
FL= gb:AK063648.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4627011/11NAC-domain containing protein 21/22, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46240Os.27277.2.S1_s_at11/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46240OsAffx.5127.1.S1_at11/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46240Os.27277.1.A1_at11/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46240OsAffx.3017.1.S1_x_at1/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46250Os.51104.2.S1_at11/116+28017187..28018817expressed protein
LOC_Os06g46260OsAffx.5128.1.S1_at10/116+28019726..28020807hypothetical protein
LOC_Os06g46270Os.51762.1.S1_at11/116+28036571..28040883NAC-domain containing protein 21/22, putative, expressed
LOC_Os06g46284NANA6+28044481..28053035Alpha-glucosidase precursor, putative, expressed
LOC_Os06g46300OsAffx.15949.1.S1_s_at11/116+28056157..28057050hypothetical protein
LOC_Os06g46310Os.25557.1.S1_at10/116+28058356..28064171Metal transporter Nramp1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009734biological_processauxin mediated signaling pathway
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51762.1.S1_at--774--10211Chr06:28040300..28040324 (25 bp)
TATTGACAGTGTGGCCACAACTTCA
LOC_Os06g46270
Os.51762.1.S1_at--250--4191Chr06:28040332..28040356 (25 bp)
CCCTCACTGACAACTACATTGCATT
LOC_Os06g46270
Os.51762.1.S1_at--477--3371Chr06:28040361..28040385 (25 bp)
CAGCCTGGTTCAATGCAAAACCTAG
LOC_Os06g46270
Os.51762.1.S1_at--602--7311Chr06:28040514..28040538 (25 bp)
GTGCTGAGCCAATTCACCAAGTTTG
LOC_Os06g46270
Os.51762.1.S1_at--882--9571Chr06:28040564..28040588 (25 bp)
TCAAAGTAATTTTTCCCAGGATGGA
LOC_Os06g46270
Os.51762.1.S1_at--139--6251Chr06:28040583..28040607 (25 bp)
GATGGATTTGATTACTTGGCTGAGA
LOC_Os06g46270
Os.51762.1.S1_at--9--9891Chr06:28040595..28040619 (25 bp)
TACTTGGCTGAGAGTGGCTTCACAC
LOC_Os06g46270
Os.51762.1.S1_at--1035--2971Chr06:28040621..28040645 (25 bp)
AATGTGGAACTCACTCAGTTGATTT
LOC_Os06g46270
Os.51762.1.S1_at--700--7991Chr06:28040684..28040708 (25 bp)
GGAGGAAACTCTTAAAGTGTGCTTA
LOC_Os06g46270
Os.51762.1.S1_at--473--7471Chr06:28040700..28040724 (25 bp)
GTGTGCTTATGTGCTATTGCATGTA
LOC_Os06g46270
Os.51762.1.S1_at--478--5751Chr06:28040736..28040760 (25 bp)
GACGTATAGTACCATTCTAGTTCAC
LOC_Os06g46270
Target Sequence 
TATTGACAGTGTGGCCACAACTTCACTGCCTCCCCTCACTGACAACTACATTGCATTTGATCAGCCTGGTTCAATGCAAA
ACCTAGAGGNTTATGAGCAAGTGCCCTGCTTCTCCAATAATCCCTCTCANNAGCCATCGTCGTCGNNGNATGTTCCGTTG
ACATCGGCCATGGTTGATCAAGAGCAAAACAATATGGGTAGGGCGANCAAGGATGTGCTGAGCCAATTCACCAAGTTTGA
AGGCAATGTGAAGAGGGAGGCCCTTCAAAGTAATTTTTCCCAGGATGGATTTGATTACTTGGCTGAGAGTGGCTTCACAC
AAATGTGGAACTCACTCAGTTGATTTAATTTCGAAGGAGATATATATTGATTGTTGCGAATTGAGGAGGAAACTCTTAAA
GTGTGCTTATGTGCTATTGCATGTAATTGTGATATAGACGTATAGTACCATTCTAGTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis