Browse Element(s) Details


OsAffx.15949.1.S1_s_at

Description tigr:9634.m04501
TID=OsAffx.15949.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4630011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46270Os.51762.1.S1_at11/116+28036571..28040883NAC-domain containing protein 21/22, putative, expressed
LOC_Os06g46284NANA6+28044481..28053035Alpha-glucosidase precursor, putative, expressed
LOC_Os06g46300OsAffx.15949.1.S1_s_at11/116+28056157..28057050hypothetical protein
LOC_Os06g46310Os.25557.1.S1_at10/116+28058356..28064171Metal transporter Nramp1, putative, expressed
LOC_Os06g46320OsAffx.15950.1.S1_at10/116+28077387..28077767NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15949.1.S1_s_at--955--4911Chr06:28056983..28057007 (25 bp)
GCTTCGCTTCTTCGTGCTTGAGCTC
LOC_Os06g46300
OsAffx.15949.1.S1_s_at--1097--10631Chr06:28056981..28057005 (25 bp)
TTCGCTTCTTCGTGCTTGAGCTCGG
LOC_Os06g46300
OsAffx.15949.1.S1_s_at--90--9351Chr06:28056980..28057004 (25 bp)
TCGCTTCTTCGTGCTTGAGCTCGGC
LOC_Os06g46300
OsAffx.15949.1.S1_s_at--224--4911Chr06:28056978..28057002 (25 bp)
GCTTCTTCGTGCTTGAGCTCGGCCG
LOC_Os06g46300
OsAffx.15949.1.S1_s_at--631--10551Chr06:28056976..28057000 (25 bp)
TTCTTCGTGCTTGAGCTCGGCCGTT
LOC_Os06g46300
OsAffx.15949.1.S1_s_at--969--10611Chr06:28056973..28056997 (25 bp)
TTCGTGCTTGAGCTCGGCCGTTGAT
LOC_Os06g46300
OsAffx.15949.1.S1_s_at--29--9411Chr06:28056972..28056996 (25 bp)
TCGTGCTTGAGCTCGGCCGTTGATG
LOC_Os06g46300
OsAffx.15949.1.S1_s_at--526--10771Chr06:28056966..28056990 (25 bp)
TTGAGCTCGGCCGTTGATGCTGCTG
LOC_Os06g46300
OsAffx.15949.1.S1_s_at--1004--8911Chr06:28056965..28056989 (25 bp)
TGAGCTCGGCCGTTGATGCTGCTGC
LOC_Os06g46300
OsAffx.15949.1.S1_s_at--444--5911Chr06:28056964..28056988 (25 bp)
GAGCTCGGCCGTTGATGCTGCTGCA
LOC_Os06g46300
OsAffx.15949.1.S1_s_at--264--4031Chr06:28056911..28056935 (25 bp)
CGTTCCTGGTGGACGACGAAGGGAG
LOC_Os06g46300
Target Sequence
GCTTCGCTTCTTCGTGCTTGAGCTCGGCCGTTGATGCTGCTGCAGCTGCCGGCAATGGCTACCGGACAACGGCGTTCCTG
GTGGACGACGAAGGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15949.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis