Browse Element(s) Details


OsAffx.15950.1.S1_at

Description tigr:9634.m04503
TID=OsAffx.15950.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4632010/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46284NANA6+28044481..28053035Alpha-glucosidase precursor, putative, expressed
LOC_Os06g46300OsAffx.15949.1.S1_s_at11/116+28056157..28057050hypothetical protein
LOC_Os06g46310Os.25557.1.S1_at10/116+28058356..28064171Metal transporter Nramp1, putative, expressed
LOC_Os06g46320OsAffx.15950.1.S1_at10/116+28077387..28077767NA
LOC_Os06g46330Os.20278.1.S1_at11/116+28089141..28093399Protein kinase domain containing protein, expressed
LOC_Os06g46340Os.48503.2.S1_at11/116+28099803..28104864Alpha-glucosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15950.1.S1_at--794--1771Chr06:28077517..28077541 (25 bp)
ACCGTGCAAATATCACGGTTATCGC
LOC_Os06g46320
OsAffx.15950.1.S1_at--697--4139Chr03:4602225..4602247 (23 bp)
CGCGGTAAACCGTGCGATTATCGCT
NONE
OsAffx.15950.1.S1_at--180--7035Chr08:3269103..3269368 (25 bp)
GTAAACCGTGCGATTATCGCTCTGA
NONE
OsAffx.15950.1.S1_at--941--2611Chr06:28077488..28077512 (25 bp)
AACCGTGCGATTATCGCTCTGAAAC
LOC_Os06g46320
OsAffx.15950.1.S1_at--483--9151Chr06:28077487..28077507 (21 bp)
TGCGATTATCGCTCTGAAACCACGA
LOC_Os06g46320
OsAffx.15950.1.S1_at--327--6551Chr06:28077432..28077504 (25 bp)
GATTATCGCTCTGAAACCACGATTA
LOC_Os06g46320
OsAffx.15950.1.S1_at--710--10151NONE
TATCGCTCTGAAACCACGATTATCG
NONE
OsAffx.15950.1.S1_at--170--4811Chr06:28077425..28077497 (25 bp)
GCTCTGAAACCACGATTATCGCGCG
LOC_Os06g46320
OsAffx.15950.1.S1_at--337--3851Chr06:28077422..28077494 (25 bp)
CTGAAACCACGATTATCGCGCGATT
LOC_Os06g46320
OsAffx.15950.1.S1_at--611--5553Chr07:8778878..8778960 (25 bp)
GAAACCACGATTATCGCGCGATTAT
NONE
OsAffx.15950.1.S1_at--348--2652Chr07:8778876..8778896 (21 bp)
AACCACGATTATCGCGCGATTATCG
NONE
Target Sequence
ACCGTGCAAATATCACGGTTATCGCGGTAAACCGTGCGATTATCGCTCTGAAACCACGATTATCGCGCGATTATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis