Browse Element(s) Details


Os.48503.2.S1_at

Description gb:AK063175.1
DB_XREF= gi:32973193
TID=Os.48503.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48503 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-A05, full insert sequence.
FL= gb:AK063175.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4634011/11Alpha-glucosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46320OsAffx.15950.1.S1_at10/116+28077387..28077767NA
LOC_Os06g46330Os.20278.1.S1_at11/116+28089141..28093399Protein kinase domain containing protein, expressed
LOC_Os06g46340Os.48503.2.S1_at11/116+28099803..28104864Alpha-glucosidase precursor, putative, expressed
LOC_Os06g46350OsAffx.15951.1.S1_at11/116+28108238..28109953Patatin-like phospholipase family protein, expressed
LOC_Os06g46360OsAffx.28131.1.S1_at11/116+28128074..28129081hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0030244biological_processcellulose biosynthesis
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0015926molecular_functionglucosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48503.2.S1_at--82--1051Chr06:28100164..28100188 (25 bp)
AGGTGCGCGCAGCTCCATTTTAGCA
LOC_Os06g46340
Os.48503.2.S1_at--771--4151Chr06:28100169..28100193 (25 bp)
CGCGCAGCTCCATTTTAGCATTTTT
LOC_Os06g46340
Os.48503.2.S1_at--332--10011Chr06:28100184..28100208 (25 bp)
TAGCATTTTTTACCGCAATTGTTCG
LOC_Os06g46340
Os.48503.2.S1_at--749--3171Chr06:28100199..28100223 (25 bp)
CAATTGTTCGATGAGCTAGCTAGCT
LOC_Os06g46340
Os.48503.2.S1_at--328--10451Chr06:28100230..28100254 (25 bp)
TTAGCTTTTCTTTCCGAGAATTGCT
LOC_Os06g46340
Os.48503.2.S1_at--728--131Chr06:28100262..28100286 (25 bp)
ATTAATTCTTGAGCTCTACTCCTAG
LOC_Os06g46340
Os.48503.2.S1_at--403--5911Chr06:28100272..28100296 (25 bp)
GAGCTCTACTCCTAGAGGGCAGCAG
LOC_Os06g46340
Os.48503.2.S1_at--37--1091Chr06:28100287..28100311 (25 bp)
AGGGCAGCAGGGAGTACCAGCTAAT
LOC_Os06g46340
Os.48503.2.S1_at--500--7651Chr06:28100296..28100320 (25 bp)
GGGAGTACCAGCTAATCACCGTTAT
LOC_Os06g46340
Os.48503.2.S1_at--429--6971Chr06:28100300..28100324 (25 bp)
GTACCAGCTAATCACCGTTATTTTT
LOC_Os06g46340
Os.48503.2.S1_at--920--8811Chr06:28100337..28100361 (25 bp)
TGATTTCTAGAAGAGCCAAAATGCC
LOC_Os06g46340
Target Sequence 
AGGTGCGCGCAGCTCCATTTTAGCATTTTTTACCGCAATTGTTCGATGAGCTAGCTAGCTTTAATTTTAGCTTTTCTTTC
CGAGAATTGCTAAGATCAATTAATTCTTGAGCTCTACTCCTAGAGGGCAGCAGGGAGTACCAGCTAATCACCGTTATTTT
TTTTTTATAAAATATGATTTCTAGAAGAGCCAAAATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48503.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis