Browse Element(s) Details


OsAffx.28131.1.S1_at

Description tigr:9634.m04508
TID=OsAffx.28131.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4636011/11hypothetical protein
LOC_Os03g154901/11hypothetical protein
LOC_Os02g169401/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46340Os.48503.2.S1_at11/116+28099803..28104864Alpha-glucosidase precursor, putative, expressed
LOC_Os06g46350OsAffx.15951.1.S1_at11/116+28108238..28109953Patatin-like phospholipase family protein, expressed
LOC_Os06g46360OsAffx.28131.1.S1_at11/116+28128074..28129081hypothetical protein
LOC_Os06g46366Os.17420.1.S1_at11/116+28132803..28137103Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g46372OsAffx.15952.1.S1_at11/116+28138206..281415543-hydroxyisobutyrate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g46372Os.51846.1.S1_x_at11/116+28138206..281415543-hydroxyisobutyrate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g46380Os.7455.1.S1_at11/116+28142933..28147374Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os06g46390Os.51643.1.S1_at11/116+28147995..28148791small nuclear ribonucleoprotein, putative, expressed
LOC_Os06g46400Os.18000.1.A1_at11/116+28150362..28155785YT521-B-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28131.1.S1_at--79--3071Chr06:28129009..28129033 (25 bp)
AATCAGATCAACTACCATACGCCCT
LOC_Os06g46360
OsAffx.28131.1.S1_at--1002--311Chr06:28128993..28129017 (25 bp)
ATACGCCCTATGCACTGGCACAGGA
LOC_Os06g46360
OsAffx.28131.1.S1_at--843--6151Chr06:28128544..28128874 (25 bp)
GAGGTACCCCAGAATCAGATCCATT
LOC_Os06g46360
OsAffx.28131.1.S1_at--317--4471Chr06:28128497..28128521 (25 bp)
GCCTGCACGCCATCATGATTCATGA
LOC_Os06g46360
OsAffx.28131.1.S1_at--878--711Chr06:28128483..28128507 (25 bp)
ATGATTCATGACCAGTTCCTTCGGA
LOC_Os06g46360
OsAffx.28131.1.S1_at--887--6691Chr06:28128469..28128493 (25 bp)
GTTCCTTCGGAGAATGCGTTGCAAA
LOC_Os06g46360
OsAffx.28131.1.S1_at--928--2511Chr06:28128446..28128470 (25 bp)
AACTTGCAATGCTTTTGTCGCTTTG
LOC_Os06g46360
OsAffx.28131.1.S1_at--322--10311Chr06:28128432..28128456 (25 bp)
TTGTCGCTTTGGCTAAGGGCACCCG
LOC_Os06g46360
OsAffx.28131.1.S1_at--704--50929Chr12:23351847..23352087 (25 bp)
GCACCCGCAATGATAGCACCTTACT
NONE
OsAffx.28131.1.S1_at--690--4671Chr06:28128163..28128187 (25 bp)
GCGGGTGCTCTAATTGATCGTCTTT
LOC_Os06g46360
OsAffx.28131.1.S1_at--616--5451Chr06:28128125..28128149 (25 bp)
GAACGCTTATATTATCCAGTGGAAC
LOC_Os06g46360
Target Sequence 
AATCAGATCAACTACCATACGCCCTATGCACTGGCACAGGATGCCGCTGGCCAGCGGATGGAATCGACGGTCGGTATTAA
TTGGTTTAGGAGGTACCCCAGAATCAGATCCATTATTAATTTATTGTTCGGCTGGGGCCTGCACGCCATCATGATTCATG
ACCAGTTCCTTCGGAGAATGCGTTGCAAACTTGCAATGCTTTTGTCGCTTTGGCTAAGGGCACCCGCAATGATAGCACCT
TACTTTACCATTGCGGGTGCTCTAATTGATCGTCTTTTGGCTCAATTAATGAACGCTTATATTATCCAGTGGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis