Browse Element(s) Details


Os.51846.1.S1_x_at

Description gb:AK064044.1
DB_XREF= gi:32974062
TID=Os.51846.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51846 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-D05, full insert sequence.
FL= gb:AK064044.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4637211/113-hydroxyisobutyrate dehydrogenase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46360OsAffx.28131.1.S1_at11/116+28128074..28129081hypothetical protein
LOC_Os06g46366Os.17420.1.S1_at11/116+28132803..28137103Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g46372OsAffx.15952.1.S1_at11/116+28138206..281415543-hydroxyisobutyrate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g46372Os.51846.1.S1_x_at11/116+28138206..281415543-hydroxyisobutyrate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g46380Os.7455.1.S1_at11/116+28142933..28147374Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os06g46390Os.51643.1.S1_at11/116+28147995..28148791small nuclear ribonucleoprotein, putative, expressed
LOC_Os06g46400Os.18000.1.A1_at11/116+28150362..28155785YT521-B-like family protein, expressed
LOC_Os06g46410Os.22750.1.S1_at11/116+28157512..28163559auxin response factor 3, putative, expressed
LOC_Os06g46410OsAffx.28217.1.S1_at1/116+28157512..28163559auxin response factor 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0003824molecular_functioncatalytic activity
GO:0004332molecular_functionfructose-bisphosphate aldolase activity
GO:0004616molecular_functionphosphogluconate dehydrogenase (decarboxylating) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51846.1.S1_x_at--748--7711Chr06:28140574..28140597 (24 bp)
GGTGGTTTCACCTCCAAACTAATGA
LOC_Os06g46372
Os.51846.1.S1_x_at--961--8531Chr06:28140848..28140872 (25 bp)
TGGAGTTGGCTTCAATTGTCCCTTT
LOC_Os06g46372
Os.51846.1.S1_x_at--498--3171Chr06:28140861..28140885 (25 bp)
AATTGTCCCTTTGGTTCTCAGGCAC
LOC_Os06g46372
Os.51846.1.S1_x_at--672--6231Chr06:28141009..28141033 (25 bp)
GATGGCTGTGAACTCAAGGACTTCT
LOC_Os06g46372
Os.51846.1.S1_x_at--225--2931Chr06:28141024..28141048 (25 bp)
AAGGACTTCTCATGTGCATTTCGCC
LOC_Os06g46372
Os.51846.1.S1_x_at--1086--2231Chr06:28141071..28141095 (25 bp)
AAATTGATCTTGTAGCTCTGCCACC
LOC_Os06g46372
Os.51846.1.S1_x_at--184--3171Chr06:28141195..28141219 (25 bp)
AATTGACGCCTTTCAGCCTGTAAAA
LOC_Os06g46372
Os.51846.1.S1_x_at--601--2351Chr06:28141241..28141265 (25 bp)
AAAGCTTTCTCTGACATTTGTACTA
LOC_Os06g46372
Os.51846.1.S1_x_at--114--7251Chr06:28141287..28141311 (25 bp)
GTCCCTCTTGTATTTTCAGGGCTGT
LOC_Os06g46372
Os.51846.1.S1_x_at--984--9831Chr06:28141319..28141343 (25 bp)
TAAAGTGTACTCTTGCTGCATTCGG
LOC_Os06g46372
Os.51846.1.S1_x_at--322--4751Chr06:28141333..28141357 (25 bp)
GCTGCATTCGGACCAAGTATTCCAT
LOC_Os06g46372
Target Sequence 
GGTGGTTTCACCTCCAAACTAATGACCAAAGATTTGGATTTGGCCATGGCCTCTGCATNTGGAGTTGGCTTCAATTGTCC
CTTTGGTTCTCAGGCACTTGAANTTTACCGAAAGCTATGTGCTGATGGCTGTGAACTCAAGGACTTCTCATGTGCATTTC
GCCACAACTATGCTGGCAAAGATGAAAATTGATCTTGTAGCTCTGCCACCTAACTTGCCACCTGTTAAAANAAATAAAGC
AATAAAAAGTTGTGTGATTGAAGTGTACTCAGGCAAAGTTGGACTATCCTTTGTAAAGTGAATTATCTTAATTGACGCCT
TTCAGCCTGTAAAATCAAATCCATTGGCTCAAAGCAAAGCTTTCTCTGACATTTGTACTAAATTGATTTTACTGAGGTAT
TGTCCCTCTTGTATTTTCAGGGCTGTGTCAACATAAAGTGTACTCTTGCTGCATTCGGACCAAGTATTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51846.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis