Browse Element(s) Details


Os.18000.1.A1_at

Description gb:C96907
DB_XREF= gi:3759649
DB_XREF=C96907
CLONE=C50107_12Z
TID=Os.18000.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18000 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4640011/11YT521-B-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46360OsAffx.28131.1.S1_at11/116+28128074..28129081hypothetical protein
LOC_Os06g46366Os.17420.1.S1_at11/116+28132803..28137103Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g46372OsAffx.15952.1.S1_at11/116+28138206..281415543-hydroxyisobutyrate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g46372Os.51846.1.S1_x_at11/116+28138206..281415543-hydroxyisobutyrate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g46380Os.7455.1.S1_at11/116+28142933..28147374Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os06g46390Os.51643.1.S1_at11/116+28147995..28148791small nuclear ribonucleoprotein, putative, expressed
LOC_Os06g46400Os.18000.1.A1_at11/116+28150362..28155785YT521-B-like family protein, expressed
LOC_Os06g46410Os.22750.1.S1_at11/116+28157512..28163559auxin response factor 3, putative, expressed
LOC_Os06g46410OsAffx.28217.1.S1_at1/116+28157512..28163559auxin response factor 3, putative, expressed
LOC_Os06g46420OsAffx.15953.1.S1_at11/116+28171763..28172389hypothetical protein
LOC_Os06g46430OsAffx.28132.1.S1_at8/116+28176435..28177924hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18000.1.A1_at--841--5651Chr06:28155234..28155258 (25 bp)
GACAGGTATGAGACAACTTCAGATC
LOC_Os06g46400
Os.18000.1.A1_at--851--7691Chr06:28155269..28155293 (25 bp)
GGGTCATGACGCCACTGGGAATTCT
LOC_Os06g46400
Os.18000.1.A1_at--258--4551Chr06:28155342..28155366 (25 bp)
GCCCTCCGAGACGATGACAGTGAGA
LOC_Os06g46400
Os.18000.1.A1_at--894--4611Chr06:28155409..28155433 (25 bp)
GCGAGATTGAGCACCTTTGATCCAT
LOC_Os06g46400
Os.18000.1.A1_at--230--5351Chr06:28155434..28155458 (25 bp)
GAAGATAGATTGTGTGCTCTCTGTT
LOC_Os06g46400
Os.18000.1.A1_at--844--5531Chr06:28155470..28155494 (25 bp)
GAAACCTGAGCAGTTGAAACGTTTA
LOC_Os06g46400
Os.18000.1.A1_at--645--5571Chr06:28155495..28155519 (25 bp)
GAAAGTTCTCTGTTTATTATCAACA
LOC_Os06g46400
Os.18000.1.A1_at--551--5251Chr06:28155553..28155577 (25 bp)
GAATCTGTATTACTGGGCACTGAGT
LOC_Os06g46400
Os.18000.1.A1_at--1151--4791Chr06:28155627..28155651 (25 bp)
GCTCGTTCTGTAACAGACTGATCTT
LOC_Os06g46400
Os.18000.1.A1_at--571--5731Chr06:28155642..28155666 (25 bp)
GACTGATCTTAAGCCGTTTGTTTTG
LOC_Os06g46400
Os.18000.1.A1_at--255--231Chr06:28155706..28155730 (25 bp)
ATATTGGTTTGTGCATACTGTGATG
LOC_Os06g46400
Target Sequence 
GACAGGTATGAGACAACTTCAGATCAGGGAAGCAGGGGTCATGACGCCACTGGGAATTCTGGAGCAGAAGGAGCCAGGTC
GCAGTCTGGGGACAGATACGGTAGAAGNGCCCTCCGAGACGATGACAGTGAGAGTGACGAGGAAGCAGCGCCCAGGAGGT
CGCGGAAACGATAAGGCGAGATTGAGCACCTTTGATCCATGAAGATAGATTGTGTGCTCTCTGTTGAGAGCGNNNNCATT
GAAACCTGAGCAGTTGAAACGTTTAGAAAGTTCTCTGTTTATTATCAACACACTCAGATTAGAACAAAAATGGCCNAATT
ACTGAATCTGTATTACTGGGCACTGAGTGTGGTCATGTTTGCCAATGGAGTTTTNTACTCGGGCAACAGGTAGATNAGCT
CGTTCTGTAACAGACTGATCTTAAGCCGTTTGTTTTGATTTTTAGAATGTAGTACACAACATGATGAGAGGATGATATAT
TGGTTTGTGCATACTGTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18000.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis