Browse Element(s) Details


Os.25557.1.S1_at

Description gb:AK070574.1
DB_XREF= gi:32980598
TID=Os.25557.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25557 (NCBI UniGene Cluster)
UG_TITLE=Integral membrane protein (OsNramp3) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058M15, full insert sequence.
FL= gb:AK070574.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4631010/11Metal transporter Nramp1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46270Os.51762.1.S1_at11/116+28036571..28040883NAC-domain containing protein 21/22, putative, expressed
LOC_Os06g46284NANA6+28044481..28053035Alpha-glucosidase precursor, putative, expressed
LOC_Os06g46300OsAffx.15949.1.S1_s_at11/116+28056157..28057050hypothetical protein
LOC_Os06g46310Os.25557.1.S1_at10/116+28058356..28064171Metal transporter Nramp1, putative, expressed
LOC_Os06g46320OsAffx.15950.1.S1_at10/116+28077387..28077767NA
LOC_Os06g46330Os.20278.1.S1_at11/116+28089141..28093399Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006828biological_processmanganese ion transport
GO:0006875biological_processmetal ion homeostasis
GO:0015691biological_processcadmium ion transport
GO:0015692biological_processlead ion transport
GO:0030001biological_processmetal ion transport
GO:0005384molecular_functionmanganese ion transporter activity
GO:0015103molecular_functioninorganic anion transporter activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25557.1.S1_at--382--8071Chr06:28058889..28058913 (25 bp)
GGAGAAGGTTCTCTTGGCCATCTGC
LOC_Os06g46310
Os.25557.1.S1_at--754--8011Chr06:28058860..28058884 (25 bp)
GGAGGACATCTCCAGCATGCAGCTT
LOC_Os06g46310
Os.25557.1.S1_at--1122--1631Chr06:28058828..28058852 (25 bp)
AGCGAACTGCTTCTGATCTCGATTA
LOC_Os06g46310
Os.25557.1.S1_at--1004--2331Chr06:28058715..28058739 (25 bp)
AAAGAGTTAGCCAGCTGATCCCTCA
LOC_Os06g46310
Os.25557.1.S1_at--348--1991Chr06:28058605..28058629 (25 bp)
ACTGCCGATTGTACACGATGGTTAG
LOC_Os06g46310
Os.25557.1.S1_at--32--7891Chr06:28058586..28058610 (25 bp)
GGTTAGCTAACTGTGATCCTGTGAC
LOC_Os06g46310
Os.25557.1.S1_at--24--571Chr06:28058571..28058595 (25 bp)
ATCCTGTGACACCAAAGCTTCTTAC
LOC_Os06g46310
Os.25557.1.S1_at--525--5231Chr06:28058527..28058551 (25 bp)
GAATATATGTCCTCTTGTGCACATG
LOC_Os06g46310
Os.25557.1.S1_at--297--291Chr06:28058488..28058512 (25 bp)
ATAGCAGCAGTGCACTGGCTCATGT
LOC_Os06g46310
Os.25557.1.S1_at--1033--2671Chr06:28058422..28058446 (25 bp)
AAGCTCCGATTGAATTTTCCTCTCC
LOC_Os06g46310
Os.25557.1.S1_at--1123--751NONE
ATGTCTGACGCTGTTTAACTTGGAT
NONE
Target Sequence 
GGAGAAGGTTCTCTTGGCCATCTGCCCCGGGAGGACATCTCCAGCATGCAGCTTCCTCAGCAGCGAACTGCTTCTGATCT
CGATTAGAAAGATGGCATACAAATACTCAAATCAATCACCAAAGAAATATACCACTGATGATAATCATGCAGCTAGTAGC
TACCTACATAGCCCAAAGAGTTAGCCAGCTGATCCCTCAGGTATTCACCTGGATCATCCTAGTGAATACTGCATACTACT
AATTCCACATATATAGTGACAANAATTTTGTCTTGATATCTGGTACTGCCGATTGTACACGATGGTTAGCTAACTGTGAT
CCTGTGACACCAAAGCTTCTTACTTAGAATCTTATACANNTTTCGAATATATGTCCTCTTGTGCACATGATAAATTTTCA
GGAATAGCAGCAGTGCACTGGCTCATGTCATTGGATATCATCAAAATGNCATATCTATTGAACAATCCTAAGCTCCGATT
GAATTTTCCTCTCCTGTACTCAATCCANTTTTTNATGTCTGACGCTGTTTAACTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis