Browse Element(s) Details


OsAffx.31752.1.S1_at

Description tigr:9640.m01496
TID=OsAffx.31752.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1539011/11hypothetical protein
LOC_Os01g115302/11hypothetical protein
LOC_Os01g295071/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15350NANA12+8760825..8766771retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g15370OsAffx.31751.1.S1_at10/1112+8770406..8772488hypothetical protein
LOC_Os12g15390OsAffx.31752.1.S1_at11/1112+8785203..8785537hypothetical protein
LOC_Os12g15400Os.53787.1.S1_at11/1112+8789746..8794641Esterase, putative, expressed
LOC_Os12g15410OsAffx.7603.1.S1_at11/1112+8795759..8796070hypothetical protein
LOC_Os12g15420Os.56258.1.S1_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15420Os.25091.1.A1_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15420Os.25091.1.A2_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31752.1.S1_at--567--77119Chr12:8785254..8785278 (25 bp)
GGGTGCGACAAAAGACAAAATGAAG
LOC_Os12g15390
OsAffx.31752.1.S1_at--422--53511Chr12:8785275..8785299 (25 bp)
GAAGATCATGCTATTGCGATTCCAT
LOC_Os12g15390
OsAffx.31752.1.S1_at--832--46327Chr12:8785290..8785314 (25 bp)
GCGATTCCATTCCTCTACTTTTCTT
LOC_Os12g15390
OsAffx.31752.1.S1_at--747--4292Chr12:8785301..8785325 (25 bp)
CCTCTACTTTTCTTGGTCAGTGGAC
LOC_Os12g15390
OsAffx.31752.1.S1_at--354--102510Chr12:8785309..8785333 (25 bp)
TTTCTTGGTCAGTGGACATCGGAGT
LOC_Os12g15390
OsAffx.31752.1.S1_at--982--3451Chr12:8785318..8785342 (25 bp)
CAGTGGACATCGGAGTAACGCCAGC
LOC_Os12g15390
OsAffx.31752.1.S1_at--435--2611Chr12:8785334..8785358 (25 bp)
AACGCCAGCGGCGAGTCTGAAAAGA
LOC_Os12g15390
OsAffx.31752.1.S1_at--1028--77313Chr12:12691909..12691933 (25 bp)
GGTGGTGATGCATGTGCTTCTACAA
NONE
OsAffx.31752.1.S1_at--1120--7311Chr12:8785383..8785445 (25 bp)
GTGCTTCTACAATCATGCTTCTGGG
LOC_Os12g15390
OsAffx.31752.1.S1_at--420--9851Chr12:8785390..8785452 (25 bp)
TACAATCATGCTTCTGGGTGCTCAC
LOC_Os12g15390
OsAffx.31752.1.S1_at--591--3071Chr12:8785393..8785455 (25 bp)
AATCATGCTTCTGGGTGCTCACCGA
LOC_Os12g15390
Target Sequence 
GGGTGCGACAAAAGACAAAATGAAGATCATGCTATTGCGATTCCATTCCTCTACTTTTCTTGGTCAGTGGACATCGGAGT
AACGCCAGCGGCGAGTCTGAAAAGAGGATGTTTTCGGGTGGTGATGCATGTGCTTCTACAATCATGCTTCTGGGTGCTCA
CCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis