Browse Element(s) Details


OsAffx.31751.1.S1_at

Description tigr:9640.m01494
TID=OsAffx.31751.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1537010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15340Os.39778.1.A1_at9/1112+8747425..8754774retrotransposon protein, putative, LINE subclass
LOC_Os12g15340OsAffx.31760.1.S1_at1/1112+8747425..8754774retrotransposon protein, putative, LINE subclass
LOC_Os12g15350NANA12+8760825..8766771retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g15370OsAffx.31751.1.S1_at10/1112+8770406..8772488hypothetical protein
LOC_Os12g15390OsAffx.31752.1.S1_at11/1112+8785203..8785537hypothetical protein
LOC_Os12g15400Os.53787.1.S1_at11/1112+8789746..8794641Esterase, putative, expressed
LOC_Os12g15410OsAffx.7603.1.S1_at11/1112+8795759..8796070hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31751.1.S1_at--116--4932Chr12:8772411..8772435 (25 bp)
GCTTGCCTCTGGTCTAAGCTTGTCG
LOC_Os12g15370
OsAffx.31751.1.S1_at--418--9691NONE
TCACGGGCAAGGTTCGCACATTGGA
NONE
OsAffx.31751.1.S1_at--366--4511Chr12:8770798..8770822 (25 bp)
GCCGAATTCGGTTGCCTGCTTCAAC
LOC_Os12g15370
OsAffx.31751.1.S1_at--752--3811Chr12:8770783..8770807 (25 bp)
CTGCTTCAACGTCAAGCCGACGGGA
LOC_Os12g15370
OsAffx.31751.1.S1_at--778--1911Chr12:8770764..8770788 (25 bp)
ACGGGAGGGCAAATCGCGTTCACGC
LOC_Os12g15370
OsAffx.31751.1.S1_at--826--5451Chr12:8770735..8770759 (25 bp)
GAACTGGCCTGTTGGTCGATTCCTT
LOC_Os12g15370
OsAffx.31751.1.S1_at--443--91Chr12:8770717..8770741 (25 bp)
ATTCCTTCCAGGGTTGCTGACGACG
LOC_Os12g15370
OsAffx.31751.1.S1_at--978--5551Chr12:8770655..8770679 (25 bp)
GAAAGGCCGCCAGGTGCGAACCCAG
LOC_Os12g15370
OsAffx.31751.1.S1_at--170--9151Chr12:8770641..8770665 (25 bp)
TGCGAACCCAGCATGTCACCAAGGA
LOC_Os12g15370
OsAffx.31751.1.S1_at--900--611Chr12:8770512..8770536 (25 bp)
ATGCTGGGACGGGTTCTCATGCTTC
LOC_Os12g15370
OsAffx.31751.1.S1_at--169--3931Chr12:8770463..8770487 (25 bp)
CGGCGCGAACGTGCTCCTGGAGATC
LOC_Os12g15370
Target Sequence 
GCTTGCCTCTGGTCTAAGCTTGTCGCTCAAGTCCTCGGTTTCGGCAGGTCGGGCCGAAGGCCCTTCGTGGTATACCTCCA
ACAAGCCTCTCACGGGCAAGGTTCGCACATTGGAGGATGCTGAGGCGGAGGCGTCGAAAATGGTTGAAGGTTTAACCACC
GCCGAATTCGGTTGCCTGCTTCAACGTCAAGCCGACGGGAGGGCAAATCGCGTTCACGCCGGCGAACTGGCCTGTTGGTC
GATTCCTTCCAGGGTTGCTGACGACGATGTATGGACGTCAAGGAAGCACAAGCGAGCCGTTGCGAAAGGCCGCCAGGTGC
GAACCCAGCATGTCACCAAGGACGCGGCCGACACCGATGCCGATGAGGAGGACAATGACGAAAGGGAGGCCGGGTCTGAC
GAAGATGGCGGATCGCGCGGTTATACCCCCAGTCCAACCTGGCTGAATGCTGGGACGGGTTCTCATGCTTCGCCCACGGG
TCCTCAGGACGTCGCCGGCGCGAACGTGCTCCTGGAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis