Browse Element(s) Details


Os.39778.1.A1_at

Description gb:CF316640
DB_XREF= gi:33688401
DB_XREF=HD--06-A05.g1
CLONE=HD--06-A05
TID=Os.39778.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39778 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g153409/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15314Os.52637.1.S1_x_at11/1112+8723474..8735356Staphylococcal nuclease homologue family protein, expressed
LOC_Os12g15330OsAffx.19685.1.S1_at11/1112+8739669..8740891hypothetical protein
LOC_Os12g15340Os.39778.1.A1_at9/1112+8747425..8754774retrotransposon protein, putative, LINE subclass
LOC_Os12g15340OsAffx.31760.1.S1_at1/1112+8747425..8754774retrotransposon protein, putative, LINE subclass
LOC_Os12g15350NANA12+8760825..8766771retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g15370OsAffx.31751.1.S1_at10/1112+8770406..8772488hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.39778.1.A1_at--1042--7731Chr12:8750219..8750243 (25 bp)
GGTGGTGCCAATGTGATGTCCCCTC
LOC_Os12g15340
Os.39778.1.A1_at--222--6131Chr12:8750269..8750293 (25 bp)
GAGTGTGGCTATGTATCACCTCGCA
LOC_Os12g15340
Os.39778.1.A1_at--885--5031Chr12:8750332..8750356 (25 bp)
GCAGTTCCAGTTGTTTGGCTGTCAA
LOC_Os12g15340
Os.39778.1.A1_at--479--2811Chr12:8750355..8750379 (25 bp)
AAGTTCTTTTGGTGGCAGTAGCTGC
LOC_Os12g15340
Os.39778.1.A1_at--1046--10831Chr12:8750385..8750409 (25 bp)
TTGTGTACAATTGTCGCACCTGTGT
LOC_Os12g15340
Os.39778.1.A1_at--1135--3391Chr12:8750416..8750439 (24 bp)
CAGCATGGCTGGTTGTGTTTCGGTT
LOC_Os12g15340
Os.39778.1.A1_at--64--10271NONE
TTTCGGTTTGGTTTGTACACTGCGC
NONE
Os.39778.1.A1_at--1079--9151Chr12:8750453..8750477 (25 bp)
TGCGCGCTGCCCATAATGTCAATGC
LOC_Os12g15340
Os.39778.1.A1_at--941--3011Chr12:8750473..8750497 (25 bp)
AATGCTAGTTGTCTTCTTGTTTTCA
LOC_Os12g15340
Os.39778.1.A1_at--1123--3191NONE
CAAGGTACACCTGTTCAACTGGAAT
NONE
Os.39778.1.A1_at--464--2271Chr12:8750547..8750571 (25 bp)
AAATGCCCAGGCCAAACAAGATGTA
LOC_Os12g15340
Target Sequence
GGTGGTGCCAATGTGATGTCCCCTCCTCCAAGAAGACATGATGAGGTGATGAGTGTGGCTATGTATCACCTCGCAGCAAT
GACCACAAGTACCAGCGGTCGTCCTCCACTTCAGCAGTTCCAGTTGTTTGGCTGTCAAGTTCTTTTGGTGGCAGTAGCTG
CCACAGTTGTGTACAATTGTCGCACCTGTGTTTCTCCCAGCATGGCTGGTTGTGTTTCGGTTTGGTTTGTACACTGCGCG
CTGCCCATAATGTCAATGCTAGTTGTCTTCTTGTTTTCATTATGTCTCAACACAAGGTACACCTGTTCAACTGGAATGTG
AGAGGGCTAAATGCCCAGGCCAAACAAGATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39778.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis