Browse Element(s) Details


Os.52637.1.S1_x_at

Description gb:AK068445.1
DB_XREF= gi:32978463
TID=Os.52637.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52637 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013152P05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152P05, full insert sequence.
FL= gb:AK068445.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1531411/11Staphylococcal nuclease homologue family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15260OsAffx.19683.1.S1_at11/1112+8698533..8699944hypothetical protein
LOC_Os12g15270OsAffx.19684.1.S1_at11/1112+8708198..8708857hypothetical protein
LOC_Os12g15280NANA12+8712553..8713062retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15290NANA12+8716403..8720024retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15300NANA12+8721043..8721468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15314Os.52637.1.S1_x_at11/1112+8723474..8735356Staphylococcal nuclease homologue family protein, expressed
LOC_Os12g15330OsAffx.19685.1.S1_at11/1112+8739669..8740891hypothetical protein
LOC_Os12g15340Os.39778.1.A1_at9/1112+8747425..8754774retrotransposon protein, putative, LINE subclass
LOC_Os12g15340OsAffx.31760.1.S1_at1/1112+8747425..8754774retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52637.1.S1_x_at--1046--7551Chr12:8725312..8725336 (25 bp)
GGGCCGTGAGATCCTCGCAAGAAAA
LOC_Os12g15314
Os.52637.1.S1_x_at--440--6331Chr12:8725141..8725165 (25 bp)
GATGCACTGGTGAAACTGATCGCTA
LOC_Os12g15314
Os.52637.1.S1_x_at--362--8851Chr12:8725125..8725149 (25 bp)
TGATCGCTAGGAAGTGTGTCACGCT
LOC_Os12g15314
Os.52637.1.S1_x_at--158--7451Chr12:8725110..8725134 (25 bp)
GTGTCACGCTTCATGTTTATGGGCA
LOC_Os12g15314
Os.52637.1.S1_x_at--360--8252Chr12:8725089..8725113 (25 bp)
GGCAGGACCAATTTAAGCGCTTCGT
LOC_Os12g15314
Os.52637.1.S1_x_at--714--2671Chr12:8725075..8725099 (25 bp)
AAGCGCTTCGTCTGTGATATCCATT
LOC_Os12g15314
Os.52637.1.S1_x_at--40--9251Chr12:8725056..8725080 (25 bp)
TCCATTGTGGTGGTGTGTTCATCCA
LOC_Os12g15314
Os.52637.1.S1_x_at--295--7131Chr12:8724906..8724930 (25 bp)
GTCATGCCTGGCACTTCAAGAACTA
LOC_Os12g15314
Os.52637.1.S1_x_at--843--911Chr12:8723654..8723678 (25 bp)
AGGCATCGCGACATCACAATTCAGA
LOC_Os12g15314
Os.52637.1.S1_x_at--527--6991Chr12:8723628..8723652 (25 bp)
GTACGTTGATGGACTCTGGTCACTT
LOC_Os12g15314
Os.52637.1.S1_x_at--1048--6752Chr12:8723556..8723580 (25 bp)
GTTACTAGACAGTTAGCCCCAGTTG
LOC_Os12g15314
Target Sequence 
GGGCCGTGAGATCCTCGCAAGAAAATACGAAATAAGACTGAGGGGCATTGATGCACCGGAGATAGGCATGCAGTATGGAA
AGGAGTCGCAGGATGCACTGGTGAAACTGATCGCTAGGAAGTGTGTCACGCTTCATGTTTATGGGCAGGACCAATTTAAG
CGCTTCGTCTGTGATATCCATTGTGGTGGTGTGTTCATCCAGGAGCAAATGCTGGTGAATGGTCATGCCTGGCACTTCAA
GAACTATGACAAACGGCCACAATTTGCAAAGTGGGAAAAAATGGCACGGGATGCACGTCAAGGGCTTTGGGCATATGATA
ACCTTGAGAAGCCATGGGAATGGAGAAAGAACAAGAGGAAGGCATCGCGACATCACAATTCAGATGTACGTTGATGGACT
CTGGTCACTTGGATGATGATCTTATCTGAAATGACATAATTTGGAATTGGATCTATGGTTACTAGACAGTTAGCCCCAGT
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52637.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis