Browse Element(s) Details


OsAffx.19683.1.S1_at

Description tigr:9640.m01483
TID=OsAffx.19683.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1526011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15222OsAffx.29272.4.S1_at11/1112+8667462..8676878expressed protein
LOC_Os12g15222Os.11414.1.S1_at11/1112+8667462..8676878expressed protein
LOC_Os12g15222Os.14164.1.S1_at10/1112+8667462..8676878expressed protein
LOC_Os12g15240OsAffx.19681.1.S1_at10/1112+8685102..8686661expressed protein
LOC_Os12g15240OsAffx.15615.1.S1_at9/1112+8685102..8686661expressed protein
LOC_Os12g15250OsAffx.19682.1.S1_at11/1112+8687515..8688216hypothetical protein
LOC_Os12g15260OsAffx.19683.1.S1_at11/1112+8698533..8699944hypothetical protein
LOC_Os12g15270OsAffx.19684.1.S1_at11/1112+8708198..8708857hypothetical protein
LOC_Os12g15280NANA12+8712553..8713062retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15290NANA12+8716403..8720024retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15300NANA12+8721043..8721468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15314Os.52637.1.S1_x_at11/1112+8723474..8735356Staphylococcal nuclease homologue family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19683.1.S1_at--90--7191Chr12:8699818..8699842 (25 bp)
GTCGGTGCTCGCGTGTGGAGTCGGA
LOC_Os12g15260
OsAffx.19683.1.S1_at--112--9271Chr12:8699780..8699804 (25 bp)
TCCGGTGCTTGCTCGTGGAAGTCAG
LOC_Os12g15260
OsAffx.19683.1.S1_at--733--10711Chr12:8699772..8699796 (25 bp)
TTGCTCGTGGAAGTCAGAGGCCGCC
LOC_Os12g15260
OsAffx.19683.1.S1_at--212--9431Chr12:8699768..8699792 (25 bp)
TCGTGGAAGTCAGAGGCCGCCTCCT
LOC_Os12g15260
OsAffx.19683.1.S1_at--1152--1311Chr12:8699757..8699781 (25 bp)
AGAGGCCGCCTCCTGATCAGGCTTC
LOC_Os12g15260
OsAffx.19683.1.S1_at--112--3911Chr12:8699432..8699717 (25 bp)
CGGCGGCGGTCGGTATCTAGTCACT
LOC_Os12g15260
OsAffx.19683.1.S1_at--1029--4671Chr12:8699427..8699712 (25 bp)
GCGGTCGGTATCTAGTCACTTGTGA
LOC_Os12g15260
OsAffx.19683.1.S1_at--315--6891Chr12:8699420..8699444 (25 bp)
GTATCTAGTCACTTGTGACGGGCCA
LOC_Os12g15260
OsAffx.19683.1.S1_at--857--10052Chr04:2113576..2113595 (20 bp)
TAGTCACTTGTGACGGGCCAGAAGT
NONE
OsAffx.19683.1.S1_at--325--2671Chr12:8699388..8699412 (25 bp)
AAGCCGACAAAGGTGTTTCTCTGAC
LOC_Os12g15260
OsAffx.19683.1.S1_at--847--4071Chr12:8699384..8699408 (25 bp)
CGACAAAGGTGTTTCTCTGACGGAT
LOC_Os12g15260
Target Sequence 
GTCGGTGCTCGCGTGTGGAGTCGGAGGCTGCCGCTGGATCCGGTGCTTGCTCGTGGAAGTCAGAGGCCGCCTCCTGATCA
GGCTTCCCCCGACCTCAGGGAGGTCGGATCTGGTGGCGACGGTGGCGGCGGCGGTCGGTATCTAGTCACTTGTGACGGGC
CAGAAGTGGAAGCCGACAAAGGTGTTTCTCTGACGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis