Browse Element(s) Details


Os.14164.1.S1_at

Description gb:AK073343.1
DB_XREF= gi:32983366
TID=Os.14164.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14164 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033029I04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033029I04, full insert sequence.
FL= gb:AK073343.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1522210/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15160OsAffx.31829.2.S1_at11/1112+8642456..8644535hypothetical protein
LOC_Os12g15160OsAffx.31829.2.S1_x_at11/1112+8642456..8644535hypothetical protein
LOC_Os12g15170OsAffx.31748.1.S1_at11/1112+8647096..8647419hypothetical protein
LOC_Os12g15180OsAffx.21596.2.A1_at11/1112+8649357..8649701hypothetical protein
LOC_Os12g15190NANA12+8659415..8660190Ca-dependent nuclease, putative
LOC_Os12g15206NANA12+8663271..8663721NA
LOC_Os12g15222OsAffx.29272.4.S1_at11/1112+8667462..8676878expressed protein
LOC_Os12g15222Os.11414.1.S1_at11/1112+8667462..8676878expressed protein
LOC_Os12g15222Os.14164.1.S1_at10/1112+8667462..8676878expressed protein
LOC_Os12g15240OsAffx.19681.1.S1_at10/1112+8685102..8686661expressed protein
LOC_Os12g15240OsAffx.15615.1.S1_at9/1112+8685102..8686661expressed protein
LOC_Os12g15250OsAffx.19682.1.S1_at11/1112+8687515..8688216hypothetical protein
LOC_Os12g15260OsAffx.19683.1.S1_at11/1112+8698533..8699944hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14164.1.S1_at--809--3511Chr12:8669412..8669436 (25 bp)
CATGACGGGCCAAGAGGGCTCTGCT
LOC_Os12g15222
Os.14164.1.S1_at--1120--7571Chr12:8669397..8669421 (25 bp)
GGGCTCTGCTGTGAGAAAACTGCTA
LOC_Os12g15222
Os.14164.1.S1_at--581--10111Chr12:8669231..8669255 (25 bp)
TATGATGAGGATTGGCTAGCGAAGA
LOC_Os12g15222
Os.14164.1.S1_at--252--1411Chr12:8669202..8669226 (25 bp)
AGACATAGATCATGCAGTTGTACAT
LOC_Os12g15222
Os.14164.1.S1_at--189--8751Chr12:8668937..8669208 (25 bp)
TGTACATGACATATCAGGCCTGCCC
LOC_Os12g15222
Os.14164.1.S1_at--304--8431Chr12:8668921..8668945 (25 bp)
GGCCTGCCCCATGGGAGATTTGCAA
LOC_Os12g15222
Os.14164.1.S1_at--761--8951Chr12:8668870..8668894 (25 bp)
TGACATAAGGGCATTGTATTGTAAC
LOC_Os12g15222
Os.14164.1.S1_at--473--6871Chr12:8668855..8668879 (25 bp)
GTATTGTAACAAATCTCCTGGGAAG
LOC_Os12g15222
Os.14164.1.S1_at--504--9271NONE
TCCTGGGAAGTCGTCATCAAGCTCA
NONE
Os.14164.1.S1_at--722--8331Chr12:8667635..8667659 (25 bp)
GGCTGAAGTCATATTCTTGACATTC
LOC_Os12g15222
Os.14164.1.S1_at--1125--2531Chr12:8667508..8667532 (25 bp)
AACTCACAGTATTTGTTTGGTCATG
LOC_Os12g15222
Target Sequence 
CATGACGGGCCAAGAGGGCTCTGCTGTGAGAAAACTGCTATTTTTTAGGCAAAATATGATAATGCAATGAGAGAGAAATA
TGATGAGGATTGGCTAGCGAAGAATCTAGACATAGATCATGCAGTTGTACATGACATATCAGGCCTGCCCCATGGGAGAT
TTGCAAATGGGAGATAGTGTAGTCAGTACAATTGACATAAGGGCATTGTATTGTAACAAATCTCCTGGGAAGTCGTCATC
AAGCTCAANTGTATGGTGCATCAAGCTCCTCAAAAAGAAAAGCATGTGAATTAAATCATGGAGATGGTGGTTCTGNTCAT
GATGATGTTAGAGACTATGGTGTTGATCATGTTGATGATAATGGAGAGTATTATGGTGACGATCATGATGATGNTATGCA
TGGCTGAAGTCATATTCTTGACATTCNTTCCAACTGATTAGCTTNAGATTCATTAAGAAANCTATTTGTNTTAAGCCAAA
TGTTTGGCTAATTNTACTATACTGATNNAGTAGTGGAAAACTCTAGAAAACTCACAGTATTTGTTTGGTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis