Browse Element(s) Details


Os.11414.1.S1_at

Description gb:AK072652.1
DB_XREF= gi:32982675
TID=Os.11414.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11414 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023127E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127E06, full insert sequence.
FL= gb:AK072652.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1522211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15160OsAffx.31829.2.S1_at11/1112+8642456..8644535hypothetical protein
LOC_Os12g15160OsAffx.31829.2.S1_x_at11/1112+8642456..8644535hypothetical protein
LOC_Os12g15170OsAffx.31748.1.S1_at11/1112+8647096..8647419hypothetical protein
LOC_Os12g15180OsAffx.21596.2.A1_at11/1112+8649357..8649701hypothetical protein
LOC_Os12g15190NANA12+8659415..8660190Ca-dependent nuclease, putative
LOC_Os12g15206NANA12+8663271..8663721NA
LOC_Os12g15222OsAffx.29272.4.S1_at11/1112+8667462..8676878expressed protein
LOC_Os12g15222Os.11414.1.S1_at11/1112+8667462..8676878expressed protein
LOC_Os12g15222Os.14164.1.S1_at10/1112+8667462..8676878expressed protein
LOC_Os12g15240OsAffx.19681.1.S1_at10/1112+8685102..8686661expressed protein
LOC_Os12g15240OsAffx.15615.1.S1_at9/1112+8685102..8686661expressed protein
LOC_Os12g15250OsAffx.19682.1.S1_at11/1112+8687515..8688216hypothetical protein
LOC_Os12g15260OsAffx.19683.1.S1_at11/1112+8698533..8699944hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11414.1.S1_at--244--2396Chr06:15529143..15529163 (21 bp)
AAACGTATGCATGGGCACCTGTTGC
NONE
Os.11414.1.S1_at--556--9191Chr12:8671102..8671126 (25 bp)
TGCCTAGCTCCCACAGAAAGACGTA
LOC_Os12g15222
Os.11414.1.S1_at--1043--8952Chr12:8670898..8670922 (25 bp)
TGAAGCGTACGGATCGAAGGCGAAC
LOC_Os12g15222
Os.11414.1.S1_at--302--2491Chr12:8670876..8670900 (25 bp)
AACAGGCGCATACGACGATGCCGGC
LOC_Os12g15222
Os.11414.1.S1_at--193--4311Chr12:8670841..8670865 (25 bp)
CCTAGCTAGGTCGAACAACTTTTGT
LOC_Os12g15222
Os.11414.1.S1_at--6--10271Chr12:8670821..8670845 (25 bp)
TTTGTTTCGATACTTCTCTTAGCGT
LOC_Os12g15222
Os.11414.1.S1_at--681--9511Chr12:8670807..8670831 (25 bp)
TCTCTTAGCGTATCGGTAGCGTCTT
LOC_Os12g15222
Os.11414.1.S1_at--1092--1631Chr12:8670790..8670814 (25 bp)
AGCGTCTTGAGGGTCTGGCTGCACC
LOC_Os12g15222
Os.11414.1.S1_at--590--9031Chr12:8670771..8670795 (25 bp)
TGCACCAGGAAGATGGACGCTGTTT
LOC_Os12g15222
Os.11414.1.S1_at--405--10671Chr12:8670738..8670762 (25 bp)
TTCCAGATCTGGACGCTGTTTGTAA
LOC_Os12g15222
Os.11414.1.S1_at--1071--9771Chr12:8670716..8670740 (25 bp)
TAAGAGCATCCATGTCTCCATCGTA
LOC_Os12g15222
Target Sequence 
AAACGTATGCATGGGCACCTGTTGCCTAGCTCCCACAGAAAGACGTACATATGCAGATCAATGTGAAAGACATAATGCAT
GCATGTCTTGCAGTTCACCTNTTGCCGGCCGGCGAGCAGCCAACGAACTTGCCGCTGAAGACGCCGTGGCTGGATTGATG
GCGCTGAGTAATGAACAAATCCAAGGCGCCGGCGTCGACAACGANCAGTACGGCGTGGTTTGCAGGGTGAAGCGTACGGA
TCGAAGGCGAACAGGCGCATACGACGATGCCGGCGATCCCTAACCCTAGCTAGGTCGAACAACTTTTGTTTCGATACTTC
TCTTAGCGTATCGGTAGCGTCTTGAGGGTCTGGCTGCACCAGGAAGATGGACGCTGTTTGAAAGAGCTTCCAGATCTGGA
CGCTGTTTGTAAGAGCATCCATGTCTCCATCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis