Browse Element(s) Details


OsAffx.29272.4.S1_at

Description tigr:9640.m01480
TID=OsAffx.29272.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1522211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15160OsAffx.31829.2.S1_at11/1112+8642456..8644535hypothetical protein
LOC_Os12g15160OsAffx.31829.2.S1_x_at11/1112+8642456..8644535hypothetical protein
LOC_Os12g15170OsAffx.31748.1.S1_at11/1112+8647096..8647419hypothetical protein
LOC_Os12g15180OsAffx.21596.2.A1_at11/1112+8649357..8649701hypothetical protein
LOC_Os12g15190NANA12+8659415..8660190Ca-dependent nuclease, putative
LOC_Os12g15206NANA12+8663271..8663721NA
LOC_Os12g15222OsAffx.29272.4.S1_at11/1112+8667462..8676878expressed protein
LOC_Os12g15222Os.11414.1.S1_at11/1112+8667462..8676878expressed protein
LOC_Os12g15222Os.14164.1.S1_at10/1112+8667462..8676878expressed protein
LOC_Os12g15240OsAffx.19681.1.S1_at10/1112+8685102..8686661expressed protein
LOC_Os12g15240OsAffx.15615.1.S1_at9/1112+8685102..8686661expressed protein
LOC_Os12g15250OsAffx.19682.1.S1_at11/1112+8687515..8688216hypothetical protein
LOC_Os12g15260OsAffx.19683.1.S1_at11/1112+8698533..8699944hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29272.4.S1_at--545--491Chr12:8674665..8674689 (25 bp)
ATCTGGAGATAGTGTTCCGGCTATG
LOC_Os12g15222
OsAffx.29272.4.S1_at--958--8791Chr12:8674653..8674677 (25 bp)
TGTTCCGGCTATGTACCTCCAATTT
LOC_Os12g15222
OsAffx.29272.4.S1_at--466--5071Chr12:8674589..8674613 (25 bp)
GCAGCTGCACTTGCTATGTTGTATA
LOC_Os12g15222
OsAffx.29272.4.S1_at--618--5591Chr12:8674529..8674553 (25 bp)
GAAATTTTTGGTCCTCTAGTACTAT
LOC_Os12g15222
OsAffx.29272.4.S1_at--782--7791Chr12:8674520..8674544 (25 bp)
GGTCCTCTAGTACTATTACAGTTGT
LOC_Os12g15222
OsAffx.29272.4.S1_at--455--2031Chr12:8674509..8674533 (25 bp)
ACTATTACAGTTGTGGTCATGGTCA
LOC_Os12g15222
OsAffx.29272.4.S1_at--437--811Chr12:8674491..8674515 (25 bp)
ATGGTCACGCTTGCTATTAGGTCGG
LOC_Os12g15222
OsAffx.29272.4.S1_at--1061--1831Chr12:8674485..8674509 (25 bp)
ACGCTTGCTATTAGGTCGGCCAAAA
LOC_Os12g15222
OsAffx.29272.4.S1_at--487--5512Chr12:8674418..8674442 (25 bp)
GAACAACCAGATGATTGCCCTATAT
LOC_Os12g15222
OsAffx.29272.4.S1_at--202--6591Chr12:8674406..8674430 (25 bp)
GATTGCCCTATATTTGGAGCCAAGT
LOC_Os12g15222
OsAffx.29272.4.S1_at--76--8071Chr12:8674391..8674415 (25 bp)
GGAGCCAAGTGGTGTAGTTTACATA
LOC_Os12g15222
Target Sequence 
ATCTGGAGATAGTGTTCCGGCTATGTACCTCCAATTTATGGATAATTTAGCAGTGCAAACTGAATACAATTGGGGAGCAG
CTGCACTTGCTATGTTGTATAGGCAATTGAGCATTGGTGCTGAGAAAGCAAGATCTGAAATTTTTGGTCCTCTAGTACTA
TTACAGTTGTGGTCATGGTCACGCTTGCTATTAGGTCGGCCAAAAAATATAATTGCAAAGACGGATGAAGTGGGGGAGCA
AGAAGAAGAACAACCAGATGATTGCCCTATATTTGGAGCCAAGTGGTGTAGTTTACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29272.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis