Browse Element(s) Details


OsAffx.31829.2.S1_at

Description tigr:9640.m01473
TID=OsAffx.31829.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1516011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15110NANA12+8618830..8621502retrotransposon protein, putative, unclassified
LOC_Os12g15120NANA12+8623547..8627229Transposable element protein, putative, Transposase_28
LOC_Os12g15130NANA12+8628222..8629619hypothetical protein
LOC_Os12g15140OsAffx.10222.1.S1_x_at2/1112+8630338..8638009Zinc knuckle family protein
LOC_Os12g15140Os.10263.1.S1_at2/1112+8630338..8638009Zinc knuckle family protein
LOC_Os12g15140OsAffx.30387.1.S1_at1/1112+8630338..8638009Zinc knuckle family protein
LOC_Os12g15140Os.54691.1.S1_x_at1/1112+8630338..8638009Zinc knuckle family protein
LOC_Os12g15150NANA12+8640043..8641489retrotransposon protein, putative, unclassified
LOC_Os12g15160OsAffx.31829.2.S1_at11/1112+8642456..8644535hypothetical protein
LOC_Os12g15160OsAffx.31829.2.S1_x_at11/1112+8642456..8644535hypothetical protein
LOC_Os12g15170OsAffx.31748.1.S1_at11/1112+8647096..8647419hypothetical protein
LOC_Os12g15180OsAffx.21596.2.A1_at11/1112+8649357..8649701hypothetical protein
LOC_Os12g15190NANA12+8659415..8660190Ca-dependent nuclease, putative
LOC_Os12g15206NANA12+8663271..8663721NA
LOC_Os12g15222OsAffx.29272.4.S1_at11/1112+8667462..8676878expressed protein
LOC_Os12g15222Os.11414.1.S1_at11/1112+8667462..8676878expressed protein
LOC_Os12g15222Os.14164.1.S1_at10/1112+8667462..8676878expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31829.2.S1_at--651--1331Chr12:8643075..8643099 (25 bp)
AGAGGTAGCACCAACCCCTGGTATC
LOC_Os12g15160
OsAffx.31829.2.S1_at--665--1611Chr12:8642747..8642771 (25 bp)
AGCTGATGTTCTCACCCCAGCAGCA
LOC_Os12g15160
OsAffx.31829.2.S1_at--656--8231Chr12:8642603..8642627 (25 bp)
GGCAAATCTTGATGAATTAGAAGCT
LOC_Os12g15160
OsAffx.31829.2.S1_at--187--2691Chr12:8642583..8642607 (25 bp)
AAGCTGGTCCAAGCTCTACACAGGC
LOC_Os12g15160
OsAffx.31829.2.S1_at--676--4711Chr12:8642581..8642605 (25 bp)
GCTGGTCCAAGCTCTACACAGGCTA
LOC_Os12g15160
OsAffx.31829.2.S1_at--127--8611Chr12:8642579..8642603 (25 bp)
TGGTCCAAGCTCTACACAGGCTAAC
LOC_Os12g15160
OsAffx.31829.2.S1_at--623--7271Chr12:8642577..8642601 (25 bp)
GTCCAAGCTCTACACAGGCTAACAT
LOC_Os12g15160
OsAffx.31829.2.S1_at--1103--2691Chr12:8642573..8642597 (25 bp)
AAGCTCTACACAGGCTAACATAGAT
LOC_Os12g15160
OsAffx.31829.2.S1_at--1086--9511Chr12:8642569..8642593 (25 bp)
TCTACACAGGCTAACATAGATCGGC
LOC_Os12g15160
OsAffx.31829.2.S1_at--1039--5111Chr12:8642497..8642521 (25 bp)
GCACAGATTGCAATCGAAGAACAGA
LOC_Os12g15160
OsAffx.31829.2.S1_at--485--6591Chr12:8642492..8642516 (25 bp)
GATTGCAATCGAAGAACAGAAGCTT
LOC_Os12g15160
Target Sequence 
AGAGGTAGCACCAACCCCTGGTATCCCTGTCTTAGCCGATATGTTTTCTTTTGACATCAGGCAGTTTATGGATGAAGAAG
AAGAAACTACAAGTAAAGCCTTGGTGCCTCTAGCCGATAATGTGAAAACAACCTTGCTGGACATCTCAAAGCGGCTTGAG
GGCTCTCTAGAAACCCTAGTGGTCAGCTGTGGATCAATCAGAGATAGATTCCATGAAATCCATGACCAAATCCCAGATGA
GCTAGCTGATGTTCTCACCCCAGCAGCATACCTTGAACAGCATCGGCTCAAGCTTGAAAAGGCAAAGCAAAGGATTGCTG
ATCGTCGCGAAAGAAAAGATCTTGAAGCAACCATCCAAGCTAGCAGGGTTTCTATCAATGAAGAAAAGGCAAATCTTGAT
GAATTAGAAGCTGGTCCAAGCTCTACACAGGCTAACATAGATCGGCTAAATGCTCGAAAGATAGAACTCCTAGCCGAGTT
AGAGCAATGCAATGCACAGATTGCAATCGAAGAACAGAAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31829.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis