Browse Element(s) Details


OsAffx.21596.2.A1_at

Description tigr:9640.m01475
TID=OsAffx.21596.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1518011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15120NANA12+8623547..8627229Transposable element protein, putative, Transposase_28
LOC_Os12g15130NANA12+8628222..8629619hypothetical protein
LOC_Os12g15140OsAffx.10222.1.S1_x_at2/1112+8630338..8638009Zinc knuckle family protein
LOC_Os12g15140Os.10263.1.S1_at2/1112+8630338..8638009Zinc knuckle family protein
LOC_Os12g15140OsAffx.30387.1.S1_at1/1112+8630338..8638009Zinc knuckle family protein
LOC_Os12g15140Os.54691.1.S1_x_at1/1112+8630338..8638009Zinc knuckle family protein
LOC_Os12g15150NANA12+8640043..8641489retrotransposon protein, putative, unclassified
LOC_Os12g15160OsAffx.31829.2.S1_at11/1112+8642456..8644535hypothetical protein
LOC_Os12g15160OsAffx.31829.2.S1_x_at11/1112+8642456..8644535hypothetical protein
LOC_Os12g15170OsAffx.31748.1.S1_at11/1112+8647096..8647419hypothetical protein
LOC_Os12g15180OsAffx.21596.2.A1_at11/1112+8649357..8649701hypothetical protein
LOC_Os12g15190NANA12+8659415..8660190Ca-dependent nuclease, putative
LOC_Os12g15206NANA12+8663271..8663721NA
LOC_Os12g15222OsAffx.29272.4.S1_at11/1112+8667462..8676878expressed protein
LOC_Os12g15222Os.11414.1.S1_at11/1112+8667462..8676878expressed protein
LOC_Os12g15222Os.14164.1.S1_at10/1112+8667462..8676878expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21596.2.A1_at--701--3331Chr12:8649422..8649446 (25 bp)
CACGTCGTGCTCAGGGTCGAGTACG
LOC_Os12g15180
OsAffx.21596.2.A1_at--557--1051Chr12:8649448..8649472 (25 bp)
AGGTGGACATCGTGCGCCAAGCTCT
LOC_Os12g15180
OsAffx.21596.2.A1_at--1132--7671Chr12:8649499..8649523 (25 bp)
GGGTTCAGGCTCCATGGCGATGTGC
LOC_Os12g15180
OsAffx.21596.2.A1_at--1126--4331Chr12:8649510..8649534 (25 bp)
CCATGGCGATGTGCATGCTGGTGGT
LOC_Os12g15180
OsAffx.21596.2.A1_at--209--3792Chr12:8649547..8649571 (25 bp)
CTCGTCGCGTGGTTCCACCAAGACT
LOC_Os12g15180
OsAffx.21596.2.A1_at--604--7491Chr12:8649555..8649579 (25 bp)
GTGGTTCCACCAAGACTCGTCGATG
LOC_Os12g15180
OsAffx.21596.2.A1_at--1141--10671Chr12:8649559..8649583 (25 bp)
TTCCACCAAGACTCGTCGATGGCAA
LOC_Os12g15180
OsAffx.21596.2.A1_at--422--4351Chr12:8649596..8649620 (25 bp)
CCAAACGCTCCTCTTTGTGGTTCTT
LOC_Os12g15180
OsAffx.21596.2.A1_at--1040--8573Chr12:8649613..8649637 (25 bp)
TGGTTCTTCATCTTGCTTCCCAGAT
LOC_Os12g15180
OsAffx.21596.2.A1_at--373--10693Chr12:8649625..8649649 (25 bp)
TTGCTTCCCAGATCGCTAAAGGTGT
LOC_Os12g15180
OsAffx.21596.2.A1_at--870--3633Chr12:8649628..8649652 (25 bp)
CTTCCCAGATCGCTAAAGGTGTTCT
LOC_Os12g15180
Target Sequence 
CACGTCGTGCTCAGGGTCGAGTACGGAGGTGGACATCGTGCGCCAAGCTCTCCTCACCGTGCGCTTGGTGCCGGTGGGGG
TTCAGGCTCCATGGCGATGTGCATGCTGGTGGTGCCTGACTTCACCTCGTCGCGTGGTTCCACCAAGACTCGTCGATGGC
AAGCCTCGTCTCCCCCAAACGCTCCTCTTTGTGGTTCTTCATCTTGCTTCCCAGATCGCTAAAGGTGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21596.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis