Browse Element(s) Details


OsAffx.19684.1.S1_at

Description tigr:9640.m01484
TID=OsAffx.19684.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1527011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15240OsAffx.19681.1.S1_at10/1112+8685102..8686661expressed protein
LOC_Os12g15240OsAffx.15615.1.S1_at9/1112+8685102..8686661expressed protein
LOC_Os12g15250OsAffx.19682.1.S1_at11/1112+8687515..8688216hypothetical protein
LOC_Os12g15260OsAffx.19683.1.S1_at11/1112+8698533..8699944hypothetical protein
LOC_Os12g15270OsAffx.19684.1.S1_at11/1112+8708198..8708857hypothetical protein
LOC_Os12g15280NANA12+8712553..8713062retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15290NANA12+8716403..8720024retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15300NANA12+8721043..8721468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15314Os.52637.1.S1_x_at11/1112+8723474..8735356Staphylococcal nuclease homologue family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19684.1.S1_at--690--7251Chr12:8708774..8708798 (25 bp)
GTCCGGAGGGAGCAGCAGTGGCAAG
LOC_Os12g15270
OsAffx.19684.1.S1_at--821--8931Chr12:8708735..8708759 (25 bp)
TGACCGCGCGGGATGCAGAGGTGGT
LOC_Os12g15270
OsAffx.19684.1.S1_at--192--8631Chr12:8708714..8708738 (25 bp)
TGGTGGTGGCGAACTCCGCCTTCGC
LOC_Os12g15270
OsAffx.19684.1.S1_at--71--9311Chr12:8708675..8708699 (25 bp)
TCCGCCACCGGTCGAGATGGTGCTC
LOC_Os12g15270
OsAffx.19684.1.S1_at--456--871Chr12:8708369..8708393 (25 bp)
AGGCGGAAGGGAGCCTGTCAACATT
LOC_Os12g15270
OsAffx.19684.1.S1_at--891--6651Chr12:8708327..8708351 (25 bp)
GTTGACATCACCCAATGCGTCGAGT
LOC_Os12g15270
OsAffx.19684.1.S1_at--869--3191Chr12:8708315..8708339 (25 bp)
CAATGCGTCGAGTCGCCATGGTTGG
LOC_Os12g15270
OsAffx.19684.1.S1_at--1159--6091Chr12:8708306..8708330 (25 bp)
GAGTCGCCATGGTTGGCCAATCGGA
LOC_Os12g15270
OsAffx.19684.1.S1_at--1057--4331Chr12:8708300..8708324 (25 bp)
CCATGGTTGGCCAATCGGAGATGGA
LOC_Os12g15270
OsAffx.19684.1.S1_at--414--8051Chr12:8708284..8708308 (25 bp)
GGAGATGGAGCCAACGCCAACTTCT
LOC_Os12g15270
OsAffx.19684.1.S1_at--293--1991Chr12:8708252..8708276 (25 bp)
ACTGCCGATGCGTCGTGTTCCCCTT
LOC_Os12g15270
Target Sequence 
GTCCGGAGGGAGCAGCAGTGGCAAGGGACACGGAGGCGGTGACCGCGCGGGATGCAGAGGTGGTGGTGGCGAACTCCGCC
TTCGCCTCCAGCTGCCGCCTCCGCCACCGGTCGAGATGGTGCTCGGGATGGGGGCGGTAGCTGATGGCAGAGGAGGCTGG
AGGCGGGGTCGTGATAAGGACGGAGGGCAGTGGTGGATGCAGCTGGAGGTGGGGCTCCGGATGGGGGCGGCGGCCGGTGG
CGGAGAAGTTCGCCACCACCGCCTCTGCGTCCCACGCGGTCGCCGCCTCCGTGTCCCGCGCGGCCGCTACTCCCTCTCGG
ACCGCGGCGAACCAACCGTACTCCGTCTCCTTCAGCGTGCTGGCGTCGCTGTCGGGGTCAGGATGGGGGTGGCGGCTGGT
GGCGGAGGCGGAAGGGAGCCTGTCAACATTAGCCACCACCGCAACTCGTTGACATCACCCAATGCGTCGAGTCGCCATGG
TTGGCCAATCGGAGATGGAGCCAACGCCAACTTCTCCTCCTCACTGCCGATGCGTCGTGTTCCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis