Browse Element(s) Details


Os.51910.1.S1_x_at

Description gb:AK064248.1
DB_XREF= gi:32974266
TID=Os.51910.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-C01, full insert sequence.
FL= gb:AK064248.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3969410/11Cytochrome P450 family protein, expressed
LOC_Os06g229194/11Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os04g093502/11expressed protein
LOC_Os06g101182/11expressed protein
LOC_Os11g156491/11
LOC_Os10g038501/11F-box domain containing protein, expressed
LOC_Os12g085641/11expressed protein
LOC_Os11g023791/11Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os01g294301/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39640NANA8+24969322..24972773Cytochrome P450 family protein
LOC_Os08g39650NANA8+24974284..24976560retrotransposon protein, putative, unclassified
LOC_Os08g39660Os.15537.1.S1_at11/118+24976813..24978479Cytochrome P450 family protein, expressed
LOC_Os08g39670NANA8+24979909..24981853retrotransposon protein, putative, LINE subclass
LOC_Os08g39680OsAffx.17424.1.S1_at8/118+24983300..24988153expressed protein
LOC_Os08g39680OsAffx.23176.3.S1_x_at1/118+24983300..24988153expressed protein
LOC_Os08g39694Os.5661.1.S1_s_at11/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.51910.1.S1_at10/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.51910.1.S1_x_at10/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.54695.1.S1_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.52051.1.S1_x_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.38269.1.S1_x_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694OsAffx.855.1.S1_x_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39710OsAffx.8275.1.S1_at7/118+25006012..25009317retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39720NANA8+25013298..25014131retrotransposon protein, putative, unclassified
LOC_Os08g39730Os.14951.1.S1_at10/118+25022315..25024025Cytochrome P450 family protein, expressed
LOC_Os08g39740OsAffx.6086.1.S1_at11/118+25024084..25026892expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006649biological_processphospholipid transfer to membrane
GO:0006869biological_processlipid transport
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009809biological_processlignin biosynthesis
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0005792cellular_componentmicrosome
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004497molecular_functionmonooxygenase activity
GO:0005516molecular_functioncalmodulin binding
GO:0008289molecular_functionlipid binding
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
GO:0019825molecular_functionoxygen binding
GO:0046409molecular_functionp-coumarate 3-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51910.1.S1_x_at--194--10273Chr08:24989192..24989216 (25 bp)
TTTCCTTTAGAAACTTAATCCTGTG
LOC_Os08g39694
Os.51910.1.S1_x_at--803--3079Chr12:8398876..8398900 (25 bp)
AATCAAAGCTTTGACCCCACATGTC
NONE
Os.51910.1.S1_x_at--1116--5817Chr09:7730848..7730872 (25 bp)
GACCCCACATGTCAGCAGCTGTTAG
NONE
Os.51910.1.S1_x_at--403--7112Chr09:7730858..7731104 (25 bp)
GTCAGCAGCTGTTAGGGACAATGAT
NONE
Os.51910.1.S1_x_at--890--5211Chr08:24989294..24989318 (25 bp)
GAATTATGCACAGTCGCTTTTCACA
LOC_Os08g39694
Os.51910.1.S1_x_at--12--1133Chr08:24989305..24989329 (25 bp)
AGTCGCTTTTCACAATTTCTCGGAT
LOC_Os08g39694
Os.51910.1.S1_x_at--646--6892Chr08:24989356..24989380 (25 bp)
GTATAACTTGCTCATTTTAACTTGG
LOC_Os08g39694
Os.51910.1.S1_x_at--643--20745Chr12:23953488..23953507 (20 bp)
ACTTGGATTTGAGTGAAACTTGAAC
NONE
Os.51910.1.S1_x_at--893--20340Chr12:4337968..4337991 (24 bp)
ACTTATTTAATATTCGATGGCCATA
LOC_Os12g08564
Os.51910.1.S1_x_at--263--84311Chr12:15102607..15102626 (20 bp)
GGCCATATAATTAAACCCATGACTT
NONE
Os.51910.1.S1_x_at--869--151NONE
ATATAAAGTTTAGCCTCGTATTTTG
NONE
Target Sequence 
TTTCCTTTAGAAACTTAATCCTGTGAAAAATAAAATCAAAGCTTTGACCCCACATGTCAGCAGCTGTTAGGGACAATGAT
ATATTTTGGATTAAAANTAAATGAATTATGCACAGTCGCTTTTCACAATTTCTCGGATTAATTCGAAATTGAATCTTTAA
ACTAGTATAACTTGCTCATTTTAACTTGGATTTGAGTGAAACTTGAACCTTATTTCATCTAAATTCATAATCTTTCCAAT
GGTATATANCTCATTGTTTAATAAAATATATTTATAATTATTACATAATTAATATCAAATGATTAGATTATGGTCAACTT
AAAAATATGCTAATAAATAAAATTGNTNTTGTACAGTAGAGTGGATGTAATAATATTTGTTTCTAGCATGTTTTTTTTTC
NCAGTAGCAATCATGAAAATTAAGTATATGTGATGTCTCAAATGAACGGATGTATAGGAAAATACTAGTACTTATTTAAT
ATTCGATGGCCATATAATTAAACCCATGACTTATAAATTGTTTATATAAAGTTTAGCCTCGTATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51910.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis