Browse Element(s) Details


Os.52051.1.S1_x_at

Description gb:AK064622.1
DB_XREF= gi:32974640
TID=Os.52051.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52051 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-D12, full insert sequence.
FL= gb:AK064622.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1011811/11expressed protein
LOC_Os04g093503/11expressed protein
LOC_Os06g229192/11Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os08g396941/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10100Os.54648.1.S1_at11/116+5142279..5143535expressed protein
LOC_Os06g10109Os.16859.1.S1_at11/116+5157232..5164172expressed protein
LOC_Os06g10109Os.20998.1.S1_at10/116+5157232..5164172expressed protein
LOC_Os06g10118Os.52051.1.S1_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.52051.1.S1_x_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51903.1.S1_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51910.1.S1_x_at2/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51910.1.S1_at2/116+5166820..5178688expressed protein
LOC_Os06g10118OsAffx.14650.1.S1_x_at1/116+5166820..5178688expressed protein
LOC_Os06g10130Os.55254.1.S1_at11/116+5178776..5179749expressed protein
LOC_Os06g10140Os.49982.1.S1_at11/116+5185448..5187308expressed protein
LOC_Os06g10150OsAffx.15346.1.S1_at11/116+5194455..5194855hypothetical protein
LOC_Os06g10160Os.55624.1.S1_at11/116+5195740..5198449Protein kinase APK1A, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0005792cellular_componentmicrosome
GO:0004497molecular_functionmonooxygenase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
GO:0019825molecular_functionoxygen binding
GO:0046409molecular_functionp-coumarate 3-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52051.1.S1_x_at--301--8531Chr06:5167188..5167212 (25 bp)
TGGACAGGCCATCCCCGGTGCTCTT
LOC_Os06g10118
Os.52051.1.S1_x_at--1041--9251Chr06:5167212..5167236 (25 bp)
TCCTCCCATCTTTCTGGAGAAATAG
LOC_Os06g10118
Os.52051.1.S1_x_at--282--2991Chr06:5167232..5167256 (25 bp)
AATAGAACGCCCGTACGCCGTATAT
LOC_Os06g10118
Os.52051.1.S1_x_at--543--6991Chr06:5167244..5167268 (25 bp)
GTACGCCGTATATGCTCACGCACTC
LOC_Os06g10118
Os.52051.1.S1_x_at--720--3733Chr08:24875252..24875271 (20 bp)
CTCACGCACTCATCAATTTGGTCGG
NONE
Os.52051.1.S1_x_at--163--8774Chr06:5167270..5167294 (25 bp)
TCAATTTGGTCGGAAACCCTTCCTG
LOC_Os06g10118
Os.52051.1.S1_x_at--352--9991Chr06:5167301..5167325 (25 bp)
TAGCCACTTGTAGCCGAGCTCGGCT
LOC_Os06g10118
Os.52051.1.S1_x_at--706--4072Chr06:5167315..5167339 (25 bp)
CGAGCTCGGCTATGGCGCAGCCATG
LOC_Os06g10118
Os.52051.1.S1_x_at--475--10517Chr10:14848521..14848540 (20 bp)
TTCAGCCGAGCCACTGACAAGCTGT
NONE
Os.52051.1.S1_x_at--802--3079Chr12:8398876..8398900 (25 bp)
AATCAAAGCTTTGACCCCACATGTC
NONE
Os.52051.1.S1_x_at--823--9631Chr06:5167611..5167635 (25 bp)
TCAGCAGCGGTTAGGGATAAGGATA
LOC_Os06g10118
Target Sequence 
TGGACAGGCCATCCCCGGTGCTCTTCCTCCCATCTTTCTGGAGAAATAGAACGCCCGTACGCCGTATATGCTCACGCACT
CATCAATTTGGTCGGAAACCCTTCCTGTCGTCCTAGCCACTTGTAGCCGAGCTCGGCTATGGCGCAGCCATGGCGGCCAT
GCGCCCCGTCCCTCCAAGCGCCGCCGCAGCCGGTGGGTGGTCGCCGGAGCTTCTCCGCACCTCCCCTGGCCGCCGCCGGG
TCGCCCTCGGCCGGCCTTCCGTGCGCGCCGTGTTCCCCTGCTGCTCCCGCTCGGTCGAGAGGAAGAAGACGAAGGTTAAA
GACGACCTTCAGCCGAGCCACTGACAAGCTGTCCCCCACTCCTCCTATTTCCTTTAGAAACTTAATCCTGTGAAAAAGAA
AATCAAAGCTTTGACCCCACATGTCAGCAGCGGTTAGGGATAAGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52051.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis