Browse Element(s) Details


OsAffx.15346.1.S1_at

Description tigr:9634.m00989
TID=OsAffx.15346.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1015011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10118Os.52051.1.S1_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.52051.1.S1_x_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51903.1.S1_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51910.1.S1_x_at2/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51910.1.S1_at2/116+5166820..5178688expressed protein
LOC_Os06g10118OsAffx.14650.1.S1_x_at1/116+5166820..5178688expressed protein
LOC_Os06g10130Os.55254.1.S1_at11/116+5178776..5179749expressed protein
LOC_Os06g10140Os.49982.1.S1_at11/116+5185448..5187308expressed protein
LOC_Os06g10150OsAffx.15346.1.S1_at11/116+5194455..5194855hypothetical protein
LOC_Os06g10160Os.55624.1.S1_at11/116+5195740..5198449Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os06g10170Os.5265.1.S1_x_at11/116+5207686..5211331Flavin-binding monooxygenase-like family protein, expressed
LOC_Os06g10180OsAffx.15347.1.S1_at11/116+5212490..5213600flavin-containing monooxygenase family protein, putative
LOC_Os06g10190OsAffx.15348.1.S1_at11/116+5215712..5217032flavin-containing monooxygenase family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15346.1.S1_at--994--2071Chr06:5194485..5194509 (25 bp)
ACATATGAAGCTCTCCTCTTTACAG
LOC_Os06g10150
OsAffx.15346.1.S1_at--566--2431Chr06:5194666..5194687 (22 bp)
AAAAGCCAGCAGAGCTGGGTCCTCC
LOC_Os06g10150
OsAffx.15346.1.S1_at--728--1371Chr06:5194673..5194697 (25 bp)
AGAGCTGGGTCCTCCACCAGGGACT
LOC_Os06g10150
OsAffx.15346.1.S1_at--223--7631Chr06:5194692..5194716 (25 bp)
GGGACTGCCCAAGAACATTGTCCTT
LOC_Os06g10150
OsAffx.15346.1.S1_at--568--2071Chr06:5194706..5194730 (25 bp)
ACATTGTCCTTGAGAATTTCACCTA
LOC_Os06g10150
OsAffx.15346.1.S1_at--1044--5211Chr06:5194719..5194743 (25 bp)
GAATTTCACCTATATCCAACACTGT
LOC_Os06g10150
OsAffx.15346.1.S1_at--99--10151Chr06:5194731..5194755 (25 bp)
TATCCAACACTGTGCCCAATGATAT
LOC_Os06g10150
OsAffx.15346.1.S1_at--1081--711Chr06:5194749..5194773 (25 bp)
ATGATATATTGAACGGCACCCGAAT
LOC_Os06g10150
OsAffx.15346.1.S1_at--941--5251Chr06:5194770..5194794 (25 bp)
GAATCCGAACAACCTCACCAACAAG
LOC_Os06g10150
OsAffx.15346.1.S1_at--716--3271Chr06:5194788..5194812 (25 bp)
CAACAAGGGTTGAAGCTGGGCATAT
LOC_Os06g10150
OsAffx.15346.1.S1_at--271--5411Chr06:5194799..5194823 (25 bp)
GAAGCTGGGCATATCGAACGGCACC
LOC_Os06g10150
Target Sequence 
ACATATGAAGCTCTCCTCTTTACAGGAACAACAAAAAAAGCCAGCAGAGCTGGGTCCTCCACCAGGGACTGCCCAAGAAC
ATTGTCCTTGAGAATTTCACCTATATCCAACACTGTGCCCAATGATATATTGAACGGCACCCGAATCCGAACAACCTCAC
CAACAAGGGTTGAAGCTGGGCATATCGAACGGCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis