Browse Element(s) Details


Os.5265.1.S1_x_at

Description gb:AK071914.1
DB_XREF= gi:32981937
TID=Os.5265.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5265 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069L20, full insert sequence.
FL= gb:AK071914.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1017011/11Flavin-binding monooxygenase-like family protein, expressed
LOC_Os03g633301/11aspartate kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10140Os.49982.1.S1_at11/116+5185448..5187308expressed protein
LOC_Os06g10150OsAffx.15346.1.S1_at11/116+5194455..5194855hypothetical protein
LOC_Os06g10160Os.55624.1.S1_at11/116+5195740..5198449Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os06g10170Os.5265.1.S1_x_at11/116+5207686..5211331Flavin-binding monooxygenase-like family protein, expressed
LOC_Os06g10180OsAffx.15347.1.S1_at11/116+5212490..5213600flavin-containing monooxygenase family protein, putative
LOC_Os06g10190OsAffx.15348.1.S1_at11/116+5215712..5217032flavin-containing monooxygenase family protein, putative
LOC_Os06g10200Os.49362.1.S1_at11/116+5220420..5224199Uridylate kinase, putative, expressed
LOC_Os06g10210Os.6376.1.S1_at11/116+5226417..5230613expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0008652biological_processamino acid biosynthesis
GO:0009067biological_processaspartate family amino acid biosynthesis
GO:0004072molecular_functionaspartate kinase activity
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5265.1.S1_x_at--1075--871Chr06:5208256..5208280 (25 bp)
ATGGCCAAGTGGGTGGCGCACCTCC
LOC_Os06g10170
Os.5265.1.S1_x_at--701--9431Chr06:5208117..5208141 (25 bp)
TCGGCGGCGTTAGCACGTGGTACAA
LOC_Os06g10170
Os.5265.1.S1_x_at--589--9851Chr06:5208097..5208121 (25 bp)
TACAACGACGAGATGTGCCGGGACA
LOC_Os06g10170
Os.5265.1.S1_x_at--464--2311Chr06:5208049..5208073 (25 bp)
AAAGGGATTCTTGCAGCTACGCTGG
LOC_Os06g10170
Os.5265.1.S1_x_at--655--9951Chr06:5208032..5208056 (25 bp)
TACGCTGGTATCCTCTGAAGTCTGA
LOC_Os06g10170
Os.5265.1.S1_x_at--841--6391Chr06:5207986..5208010 (25 bp)
GATCGATCGATCACTGATGTGTTGA
LOC_Os06g10170
Os.5265.1.S1_x_at--1109--5451Chr06:5207934..5207958 (25 bp)
GAACTTTGGAATTGTTGGGCTTTCA
LOC_Os06g10170
Os.5265.1.S1_x_at--41--3091Chr06:5207899..5207923 (25 bp)
AATAAGTTGGGCTGCGATATGAAGA
LOC_Os06g10170
Os.5265.1.S1_x_at--840--2391Chr06:5207841..5207865 (25 bp)
AAACTTTGTTGCATCGCCCATCGTT
LOC_Os06g10170
Os.5265.1.S1_x_at--768--6492Chr03:35733241..35733261 (21 bp)
GATATACATGTGTGATGTGTCTGAA
LOC_Os03g63330
Os.5265.1.S1_x_at--734--6071Chr06:5207708..5207732 (25 bp)
GAGTATATGGCCTCATTTGATTTAA
LOC_Os06g10170
Target Sequence 
ATGGCCAAGTGGGTGGCGCACCTCCTCGCCGGCGCGTTCCGGCTGCCGAGCGTCGTGCGGATGGAGGCGAGCGCGGCGGA
GTGGGACGAACACCTGGCGATGAGGAGGCACGGCGAGGGCGGCGGCGGCAANCCGTGCCTCGGCGGCGTTAGCACGTGGT
ACAACGACGAGATGTGCCGGGACATGGGGTACGAGCCGAGGAGGAAGAAAGGGATTCTTGCAGCTACGCTGGTATCCTCT
GAAGTCTGAACTCAAGTGAAACTGATCAGTGATCGATCGATCACTGATGTGTTGATCACGAGTATACGATAAAAAAGAAC
ATGAACTTTGGAATTGTTGGGCTTTCAGAAAGGGGAAAATAAGTTGGGCTGCGATATGAAGAGGAAAATAAGTCGAGGAA
ATAAGCGTTGTTCCNAAACTTTGTTGCATCGCCCATCGTTCTTCTGNNAAACNTTGTTNGTGTATATCTATTNCCGTCTG
GCTAAAATCTAACAGAGAGCACGATACCNTTTCGAGATATACATGTGTGATGTGTCTGAAAAANACAAGAGTATATGGCC
TCATTTGATTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5265.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis