Browse Element(s) Details


Os.49362.1.S1_at

Description gb:AK106691.1
DB_XREF= gi:32991900
TID=Os.49362.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49362 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-C08, full insert sequence.
FL= gb:AK106691.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1020011/11Uridylate kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10160Os.55624.1.S1_at11/116+5195740..5198449Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os06g10170Os.5265.1.S1_x_at11/116+5207686..5211331Flavin-binding monooxygenase-like family protein, expressed
LOC_Os06g10180OsAffx.15347.1.S1_at11/116+5212490..5213600flavin-containing monooxygenase family protein, putative
LOC_Os06g10190OsAffx.15348.1.S1_at11/116+5215712..5217032flavin-containing monooxygenase family protein, putative
LOC_Os06g10200Os.49362.1.S1_at11/116+5220420..5224199Uridylate kinase, putative, expressed
LOC_Os06g10210Os.6376.1.S1_at11/116+5226417..5230613expressed protein
LOC_Os06g10220OsAffx.4786.1.S1_at11/116+5236898..5239270hypothetical protein
LOC_Os06g10230Os.11476.1.S1_at11/116+5243152..5250844Leucine Rich Repeat family protein, expressed
LOC_Os06g10230OsAffx.10959.1.S1_at1/116+5243152..5250844Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009041molecular_functionuridylate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49362.1.S1_at--528--7951Chr06:5223688..5223712 (25 bp)
GGATACAGAATGTCTCGCACACAGT
LOC_Os06g10200
Os.49362.1.S1_at--74--5131Chr06:5223704..5223728 (25 bp)
GCACACAGTTGTTGCCCTTGATTAA
LOC_Os06g10200
Os.49362.1.S1_at--686--3651Chr06:5223804..5223828 (25 bp)
CTTAACGTTTTGCAGGTGTCTCAGA
LOC_Os06g10200
Os.49362.1.S1_at--937--2031Chr06:5223848..5223872 (25 bp)
ACTATCTCTGCCTTTAACACCGAAA
LOC_Os06g10200
Os.49362.1.S1_at--771--771Chr06:5223877..5223901 (25 bp)
ATGTGCTGCCGACATGTCACTAGAT
LOC_Os06g10200
Os.49362.1.S1_at--641--1191Chr06:5223920..5223944 (25 bp)
AGTAGATCTGTTTCTTGTTCGTGCT
LOC_Os06g10200
Os.49362.1.S1_at--590--5871Chr06:5223948..5223972 (25 bp)
GAGCCGGAGCACATGCCTAGTGTTT
LOC_Os06g10200
Os.49362.1.S1_at--617--2291Chr06:5224049..5224073 (25 bp)
AAATGATCTCTGACCTAGTTTCCTG
LOC_Os06g10200
Os.49362.1.S1_at--730--611Chr06:5224110..5224134 (25 bp)
ATGCGATCATGGACGAGTCTCCCGT
LOC_Os06g10200
Os.49362.1.S1_at--424--9291Chr06:5224129..5224153 (25 bp)
TCCCGTAGTCTGTAACCTTCTGTTG
LOC_Os06g10200
Os.49362.1.S1_at--1106--5551Chr06:5224176..5224195 (20 bp)
GAAAGCTGGCCTTCCAATGATCGAC
LOC_Os06g10200
Target Sequence 
GGATACAGAATGTCTCGCACACAGTTGTTGCCCTTGATTAAAAATTTTGATCAATACACATAATGATTGATCAGATCATG
CATATCTATCATCAACAGACATGCCCTCATGGCATCCTTAACGTTTTGCAGGTGTCTCAGAAAAGCATGTACGCATGCAG
ACTATCTCTGCCTTTAACACCGAAAGCTCATGTGCTGCCGACATGTCACTAGATAATCCTTTGCCTGAAATAAGTAGATC
TGTTTCTTGTTCGTGCTGGGGAGCCGGAGCACATGCCTAGTGTTTTTGTGCACTCGTCGTTGCCCTGTGCACTTCCATCA
GTTCTTAAACTGAAACTGATGTCACATTCTCTGTGAACAACAAATGATCTCTGACCTAGTTTCCTGATTTTGATATTGAG
GGTGGGAGTCAGCAGCTTGCTGATGCGATCATGGACGAGTCTCCCGTAGTCTGTAACCTTCTGTTGTTACTGTGTTTTTC
TCTGAAAGCTGGCCTTCCAATGATCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis