Browse Element(s) Details


OsAffx.10959.1.S1_at

Description gb:NM_191593.1
DB_XREF= gi:34910269
GEN=OSJNBa0089K24.22
TID=OsAffx.10959.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0089K24.22 (OSJNBa0089K24.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g102301/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10200Os.49362.1.S1_at11/116+5220420..5224199Uridylate kinase, putative, expressed
LOC_Os06g10210Os.6376.1.S1_at11/116+5226417..5230613expressed protein
LOC_Os06g10220OsAffx.4786.1.S1_at11/116+5236898..5239270hypothetical protein
LOC_Os06g10230Os.11476.1.S1_at11/116+5243152..5250844Leucine Rich Repeat family protein, expressed
LOC_Os06g10230OsAffx.10959.1.S1_at1/116+5243152..5250844Leucine Rich Repeat family protein, expressed
LOC_Os06g10240OsAffx.27546.1.S1_at10/116+5252679..5253095hypothetical protein
LOC_Os06g10240OsAffx.27546.1.S1_x_at8/116+5252679..5253095hypothetical protein
LOC_Os06g10250OsAffx.15349.1.S1_at10/116+5257956..5260613hypothetical protein
LOC_Os06g10260OsAffx.15350.1.S1_at11/116+5263604..5264959hypothetical protein
LOC_Os06g10269NANA6+5270723..5271311NA

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009887biological_processorgan morphogenesis
GO:0009965biological_processleaf morphogenesis
GO:0016049biological_processcell growth
GO:0030155biological_processregulation of cell adhesion
GO:0042831biological_processdefense response to pathogenic fungi
GO:0051301biological_processcell division
GO:0005739cellular_componentmitochondrion
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10959.1.S1_at--602--8171Chr01:3836101..3836125 (25 bp)
GGAACATTCAAAGCCCACATATCTC
NONE
OsAffx.10959.1.S1_at--280--2091Chr01:3836117..3836141 (25 bp)
ACATATCTCGATGGCAGATCCTGCC
NONE
OsAffx.10959.1.S1_at--504--1351Chr01:3837380..3837404 (25 bp)
AGAGACTTGCTTTGCCTACAACTCA
NONE
OsAffx.10959.1.S1_at--1130--231Chr01:3837404..3837428 (25 bp)
ATATAATATCCAGTGCTCCTACCCT
NONE
OsAffx.10959.1.S1_at--304--1811Chr01:3837424..3837447 (24 bp)
ACCCTGAGGTCCCATTTGGTCAAGA
NONE
OsAffx.10959.1.S1_at--70--5311Chr01:3837644..3837668 (25 bp)
GAAGGAGCTCAATGCACGCGGTTTT
NONE
OsAffx.10959.1.S1_at--348--7111Chr01:3837681..3837705 (25 bp)
GTCACCAATACAGCAGGTTCTCGAG
NONE
OsAffx.10959.1.S1_at--1155--7891Chr01:3837696..3837720 (25 bp)
GGTTCTCGAGAACATGCTCCAAGAA
NONE
OsAffx.10959.1.S1_at--1118--7691Chr01:3837752..3837776 (25 bp)
GGGTCGTCGAAGTGCAAACCATTAT
NONE
OsAffx.10959.1.S1_at--361--632Chr01:3837822..3837846 (25 bp)
ATGCTCCCAGTTTTCTTGTTGTGTA
NONE
OsAffx.10959.1.S1_at--255--10351Chr01:3837912..3837936 (25 bp)
TTATTATACTCATCCCCTGAAGGCC
NONE
Target Sequence 
GGAACATTCAAAGCCCACATATCTCGATGGCAGATCCTGCCCAGTCACTTTGCAGAAAATGCATTGCGATTGCAAACATA
TCAGATCATACTTAATTTACGTAGTTACGAGGAGCAGGGAAGGAAAATGTCTCAATTGCAAACAGGTTTAGAGACTTGCT
TTGCCTACAACTCATATAATATCCAGTGCTCCTACCCTGAGGTCCCATTTGGTCAAGAGTGGACAATGTGGAAGGAGCTC
AATGCACGCGGTTTTGAGAAACAAGATGTCACCAATACAGCAGGTTCTCGAGAACATGCTCCAAGAACTTCCAAGAACTC
AGAGTTTGGAGGGGCACTGGGTCGTCGAAGTGCAAACCATTATGCAAGATCTAAATCCTTTTTAAAAACTAAATTCTTTG
GAGCCTGTATGCTCCCAGTTTTCTTGTTGTGTAATCAACTTTATTTCTACTCTAATGGAATGACATGCAAAGCTTTTGTG
TGCCCCCCTGCAGAATTTTTATTATACTCATCCCCTGAAGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis