Browse Element(s) Details


OsAffx.4786.1.S1_at

Description tigr:9634.m00995
TID=OsAffx.4786.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1022011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10180OsAffx.15347.1.S1_at11/116+5212490..5213600flavin-containing monooxygenase family protein, putative
LOC_Os06g10190OsAffx.15348.1.S1_at11/116+5215712..5217032flavin-containing monooxygenase family protein, putative
LOC_Os06g10200Os.49362.1.S1_at11/116+5220420..5224199Uridylate kinase, putative, expressed
LOC_Os06g10210Os.6376.1.S1_at11/116+5226417..5230613expressed protein
LOC_Os06g10220OsAffx.4786.1.S1_at11/116+5236898..5239270hypothetical protein
LOC_Os06g10230Os.11476.1.S1_at11/116+5243152..5250844Leucine Rich Repeat family protein, expressed
LOC_Os06g10230OsAffx.10959.1.S1_at1/116+5243152..5250844Leucine Rich Repeat family protein, expressed
LOC_Os06g10240OsAffx.27546.1.S1_at10/116+5252679..5253095hypothetical protein
LOC_Os06g10240OsAffx.27546.1.S1_x_at8/116+5252679..5253095hypothetical protein
LOC_Os06g10250OsAffx.15349.1.S1_at10/116+5257956..5260613hypothetical protein
LOC_Os06g10260OsAffx.15350.1.S1_at11/116+5263604..5264959hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4786.1.S1_at--1001--9771Chr06:5238835..5238859 (25 bp)
TAAGGATGATGTGTTGTCTTCTCAA
LOC_Os06g10220
OsAffx.4786.1.S1_at--1049--1211Chr06:5238874..5238898 (25 bp)
AGTTCCATCCCCTAAGAAGCGCAAG
LOC_Os06g10220
OsAffx.4786.1.S1_at--717--2671Chr06:5238890..5238914 (25 bp)
AAGCGCAAGGGTCTTCTTCCAAGCT
LOC_Os06g10220
OsAffx.4786.1.S1_at--479--3631Chr06:5238905..5238929 (25 bp)
CTTCCAAGCTCTGTCGACAAGAACA
LOC_Os06g10220
OsAffx.4786.1.S1_at--205--1431Chr06:5238943..5238967 (25 bp)
AGAACTGAGCCCTGTTGACGATGCC
LOC_Os06g10220
OsAffx.4786.1.S1_at--1005--5291Chr06:5239012..5239036 (25 bp)
GAAGGCATTGTATCCGGCTGTTGTA
LOC_Os06g10220
OsAffx.4786.1.S1_at--1140--6631Chr06:5239031..5239055 (25 bp)
GTTGTAGACAGTTCTCCAGGCAAGA
LOC_Os06g10220
OsAffx.4786.1.S1_at--585--6091Chr06:5239076..5239100 (25 bp)
GAGTGCTGTAAAAACCGGCCTTGCC
LOC_Os06g10220
OsAffx.4786.1.S1_at--819--4311Chr06:5239094..5239118 (25 bp)
CCTTGCCATTGCCTGCAGACAAAAA
LOC_Os06g10220
OsAffx.4786.1.S1_at--1152--10211Chr06:5239153..5239177 (25 bp)
TATTGCACTTCTACCTGAACTAACC
LOC_Os06g10220
OsAffx.4786.1.S1_at--807--5531Chr06:5239189..5239213 (25 bp)
GAAACTTGTCGCGATTAGTCTCAAT
LOC_Os06g10220
Target Sequence 
TAAGGATGATGTGTTGTCTTCTCAACATACTAAACCGGAAGTTCCATCCCCTAAGAAGCGCAAGGGTCTTCTTCCAAGCT
CTGTCGACAAGAACAAGTCACAGAGTAAAGAACTGAGCCCTGTTGACGATGCCACCAGCAGCCCAACAAATTCCACCAGC
AGCCCAACAAACTGCAGGAAGGCATTGTATCCGGCTGTTGTAGACAGTTCTCCAGGCAAGAACAGGGGCTACGACGAGCG
TGAGTGCTGTAAAAACCGGCCTTGCCATTGCCTGCAGACAAAAAGCATCAATGTAATGGATGCCTTTGCTTCTCCACCTA
TTGCACTTCTACCTGAACTAACCTCAGTTCAGACGAAACTTGTCGCGATTAGTCTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis