Browse Element(s) Details


Os.6376.1.S1_at

Description gb:AK121461.1
DB_XREF= gi:37991084
TID=Os.6376.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6376 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023143N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143N19, full insert sequence.
FL= gb:AK121461.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1021011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10170Os.5265.1.S1_x_at11/116+5207686..5211331Flavin-binding monooxygenase-like family protein, expressed
LOC_Os06g10180OsAffx.15347.1.S1_at11/116+5212490..5213600flavin-containing monooxygenase family protein, putative
LOC_Os06g10190OsAffx.15348.1.S1_at11/116+5215712..5217032flavin-containing monooxygenase family protein, putative
LOC_Os06g10200Os.49362.1.S1_at11/116+5220420..5224199Uridylate kinase, putative, expressed
LOC_Os06g10210Os.6376.1.S1_at11/116+5226417..5230613expressed protein
LOC_Os06g10220OsAffx.4786.1.S1_at11/116+5236898..5239270hypothetical protein
LOC_Os06g10230Os.11476.1.S1_at11/116+5243152..5250844Leucine Rich Repeat family protein, expressed
LOC_Os06g10230OsAffx.10959.1.S1_at1/116+5243152..5250844Leucine Rich Repeat family protein, expressed
LOC_Os06g10240OsAffx.27546.1.S1_at10/116+5252679..5253095hypothetical protein
LOC_Os06g10240OsAffx.27546.1.S1_x_at8/116+5252679..5253095hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6376.1.S1_at--448--671Chr06:5229681..5229704 (24 bp)
ATGAAGACATTCCTATTCCTGCGGG
LOC_Os06g10210
Os.6376.1.S1_at--474--3351Chr06:5229688..5229790 (25 bp)
CATTCCTATTCCTGCGGGTACAAAG
LOC_Os06g10210
Os.6376.1.S1_at--1038--5011Chr06:5230178..5230199 (22 bp)
GCAGGGCTCTGTTCGGTATGTACAT
LOC_Os06g10210
Os.6376.1.S1_at--466--751Chr06:5230192..5230216 (25 bp)
ATGTACATTGGCGATTCACCGGTCT
LOC_Os06g10210
Os.6376.1.S1_at--1070--71Chr06:5230237..5230261 (25 bp)
ATTGCCCAAAACGTAGCCGGGCTCA
LOC_Os06g10210
Os.6376.1.S1_at--806--4491Chr06:5230252..5230276 (25 bp)
GCCGGGCTCATAGGTAAATGCTGAA
LOC_Os06g10210
Os.6376.1.S1_at--955--2791Chr06:5230449..5230473 (25 bp)
AAGATTAGCATCTGTTTACGGCGCA
LOC_Os06g10210
Os.6376.1.S1_at--995--8771Chr06:5230461..5230485 (25 bp)
TGTTTACGGCGCAAGGGCACCCATT
LOC_Os06g10210
Os.6376.1.S1_at--340--5071Chr06:5230477..5230501 (25 bp)
GCACCCATTCCTTTTTCTATGTGGA
LOC_Os06g10210
Os.6376.1.S1_at--332--4191Chr06:5230510..5230534 (25 bp)
CCCTCTGCCATTTCATACACAGGAG
LOC_Os06g10210
Os.6376.1.S1_at--299--9651Chr06:5230562..5230586 (25 bp)
TCAGATGCCTCTTCCATGAGTATAA
LOC_Os06g10210
Target Sequence 
ATGAAGACATTCCTATTCCTGCGGGTACAAAGATCGACTTNTGCCAAACTTNTGATGGCCAGCTAATAACAGAAATTGAT
GGCAGACAAATTGGTGCTGTTAAGAGCAAAGACCTNTGCAGGGCTCTGTTCGGTATGTACATTGGCGATTCACCGGTCTC
ATTGNAGGCCAAAAAANGATATTGCCCAAAACGTAGCCGGGCTCATAGGTAAATGCTGAAGAAACTGGAAACCNAACGCA
GCTAGTCGGCCAATTATTNNATTNTTCTATNCAGTAAGAAGAGGAAGCNCNCATTGAAGAGATTAGGCGAGGATCATAGT
ATGTATATACATCGAGAGATCTGTAACTTGTAAAGTGAAAAAAGAAAAAGCAAAATCGTAATGTACATATGGAAGATTAG
CATCTGTTTACGGCGCAAGGGCACCCATTCCTTTTTCTATGTGGATGGATGGACCCTCTGCCATTTCATACACAGGAGTG
ACAGGTTGTATAGTACATGAGAAATTCAGATGCCTCTTCCATGAGTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis