Browse Element(s) Details


OsAffx.15348.1.S1_at

Description tigr:9634.m00993
TID=OsAffx.15348.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1019011/11flavin-containing monooxygenase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10150OsAffx.15346.1.S1_at11/116+5194455..5194855hypothetical protein
LOC_Os06g10160Os.55624.1.S1_at11/116+5195740..5198449Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os06g10170Os.5265.1.S1_x_at11/116+5207686..5211331Flavin-binding monooxygenase-like family protein, expressed
LOC_Os06g10180OsAffx.15347.1.S1_at11/116+5212490..5213600flavin-containing monooxygenase family protein, putative
LOC_Os06g10190OsAffx.15348.1.S1_at11/116+5215712..5217032flavin-containing monooxygenase family protein, putative
LOC_Os06g10200Os.49362.1.S1_at11/116+5220420..5224199Uridylate kinase, putative, expressed
LOC_Os06g10210Os.6376.1.S1_at11/116+5226417..5230613expressed protein
LOC_Os06g10220OsAffx.4786.1.S1_at11/116+5236898..5239270hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15348.1.S1_at--256--911Chr06:5216642..5216706 (25 bp)
AGGCGTACAGGAGTTCCCGCGGCAC
LOC_Os06g10190
OsAffx.15348.1.S1_at--347--2831Chr06:5216130..5216154 (25 bp)
AAGTTCGACTTCGTGATCCTTTGCA
LOC_Os06g10190
OsAffx.15348.1.S1_at--546--9251Chr06:5216114..5216138 (25 bp)
TCCTTTGCATTGGACGGTATGGCGT
LOC_Os06g10190
OsAffx.15348.1.S1_at--939--10091Chr06:5216097..5216121 (25 bp)
TATGGCGTTGCGAGCGTTCCAACAT
LOC_Os06g10190
OsAffx.15348.1.S1_at--400--8031Chr06:5216061..5216085 (25 bp)
GGAGTACCTGAAGCGTTCCATGGAC
LOC_Os06g10190
OsAffx.15348.1.S1_at--59--8131Chr06:5216020..5216044 (25 bp)
GGACTACTCTAGCATGGACCATACG
LOC_Os06g10190
OsAffx.15348.1.S1_at--246--8411Chr06:5215990..5216014 (25 bp)
GGCCGAGCTGATTCGCGACAAGCGC
LOC_Os06g10190
OsAffx.15348.1.S1_at--242--5611Chr06:5215974..5215998 (25 bp)
GACAAGCGCATAGCCGTGGTTGGTT
LOC_Os06g10190
OsAffx.15348.1.S1_at--581--7891Chr06:5215953..5215977 (25 bp)
GGTTCTGGCAAATCGGCCTTCGACA
LOC_Os06g10190
OsAffx.15348.1.S1_at--700--5631Chr06:5215932..5215956 (25 bp)
GACACCGTTGCGCAATGTGCCGATG
LOC_Os06g10190
OsAffx.15348.1.S1_at--974--771Chr06:5215796..5215942 (25 bp)
ATGTGCCGATGTAAACGCCTTGAAA
LOC_Os06g10190
Target Sequence 
AGGCGTACAGGAGTTCCCGCGGCACGACGAGGTGGCCGCGTACCTCGACGCGTACGCGCGGCGGTTCGGCGTGCGGGAGC
GCGTCCGGTTCGGCAGCAAGGTGGTGAGCGCCGAGTACGCCGGCGTGCCGGAGGAGGAGGCGGCGGCGTGGGAGAGGTGG
TCCGGCAACGGCGAGGCGTTCGGCGACGGCAGGGGTGAGTGGCTTCTCACGGTGCAGCACCGCGAATCGGAGAACCTCCA
GACATATAAGTTCGACTTCGTGATCCTTTGCATTGGACGGTATGGCGTTGCGAGCGTTCCAACATTTCCACCCAAAGGAG
TACCTGAAGCGTTCCATGGACAAGTGCTCCACTCCATGGACTACTCTAGCATGGACCATACGGCCGCGGCCGAGCTGATT
CGCGACAAGCGCATAGCCGTGGTTGGTTCTGGCAAATCGGCCTTCGACACCGTTGCGCAATGTGCCGATGTAAACGCCTT
GAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15348.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis