Browse Element(s) Details


Os.55624.1.S1_at

Description gb:AK109607.1
DB_XREF= gi:32994816
TID=Os.55624.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55624 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-F09, full insert sequence.
FL= gb:AK109607.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1016011/11Protein kinase APK1A, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10118Os.52051.1.S1_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.52051.1.S1_x_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51903.1.S1_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51910.1.S1_x_at2/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51910.1.S1_at2/116+5166820..5178688expressed protein
LOC_Os06g10118OsAffx.14650.1.S1_x_at1/116+5166820..5178688expressed protein
LOC_Os06g10130Os.55254.1.S1_at11/116+5178776..5179749expressed protein
LOC_Os06g10140Os.49982.1.S1_at11/116+5185448..5187308expressed protein
LOC_Os06g10150OsAffx.15346.1.S1_at11/116+5194455..5194855hypothetical protein
LOC_Os06g10160Os.55624.1.S1_at11/116+5195740..5198449Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os06g10170Os.5265.1.S1_x_at11/116+5207686..5211331Flavin-binding monooxygenase-like family protein, expressed
LOC_Os06g10180OsAffx.15347.1.S1_at11/116+5212490..5213600flavin-containing monooxygenase family protein, putative
LOC_Os06g10190OsAffx.15348.1.S1_at11/116+5215712..5217032flavin-containing monooxygenase family protein, putative
LOC_Os06g10200Os.49362.1.S1_at11/116+5220420..5224199Uridylate kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55624.1.S1_at--724--4111Chr06:5196262..5196286 (25 bp)
CGAAGGTGGCGCACCAGTGCCTGCA
LOC_Os06g10160
Os.55624.1.S1_at--792--1131Chr06:5196247..5196271 (25 bp)
AGTGCCTGCAGAGCGTGCCCAAGTC
LOC_Os06g10160
Os.55624.1.S1_at--562--1451Chr06:5196040..5196064 (25 bp)
AGAAGCACGTCACGTCGGCCGTGCA
LOC_Os06g10160
Os.55624.1.S1_at--434--7331Chr06:5195975..5195999 (25 bp)
GTGAAACGACCGGAGAGCCCACCGA
LOC_Os06g10160
Os.55624.1.S1_at--197--6011Chr06:5195963..5195987 (25 bp)
GAGAGCCCACCGAGTGTGATCTGAT
LOC_Os06g10160
Os.55624.1.S1_at--102--3371Chr06:5195956..5195980 (25 bp)
CACCGAGTGTGATCTGATGAGTACA
LOC_Os06g10160
Os.55624.1.S1_at--954--7011Chr06:5195910..5195934 (25 bp)
GTACATAGCAAAACTACATGGTCCT
LOC_Os06g10160
Os.55624.1.S1_at--128--2031Chr06:5195898..5195922 (25 bp)
ACTACATGGTCCTTGATTCATTTGT
LOC_Os06g10160
Os.55624.1.S1_at--1067--6871Chr06:5195875..5195899 (25 bp)
GTATTATACTACCTTTGTTCGTGAT
LOC_Os06g10160
Os.55624.1.S1_at--632--9891Chr06:5195869..5195893 (25 bp)
TACTACCTTTGTTCGTGATGTTTTT
LOC_Os06g10160
Os.55624.1.S1_at--902--9731Chr06:5195812..5195836 (25 bp)
TAATAGAGTTGTTTAACTCCCTTTG
LOC_Os06g10160
Target Sequence 
CGAAGGTGGCGCACCAGTGCCTGCAGAGCGTGCCCAAGTCGCGCCCCTGCATGCGCGACGTCGTCGACGCGCTCGAGCCG
CTGCTCGCCGTCGACGACGACGTGCCCATGGGCCCGTTCGTGTTCACGGTCGGCGGCGAGGAGGCGGCGGCGGCGGCGGC
CGGGAGTAGCGCCGCCGGCGACGCCGGCGACGACGAGCCGGCGAGGGGGAGCCGGCGGGGAAAGAAGCACGTCACGTCGG
CCGTGCACGCGGAGAGCCCGCTGCGCGACGGCCGGTACGCGAGCAGGGTGAAACGACCGGAGAGCCCACCGAGTGTGATC
TGATGAGTACATAGAACAAACAAACTGAATTTGTACATAGCAAAACTACATGGTCCTTGATTCATTTGTATTATACTACC
TTTGTTCGTGATGTTTTTTGTCTAAAGAATTTGCTAAGGGAAACGTTGATTAATAGAGTTGTTTAACTCCCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis