Browse Element(s) Details


OsAffx.14650.1.S1_x_at

Description tigr:9633.m01066
TID=OsAffx.14650.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1198011/11Timeless protein, expressed
LOC_Os06g101181/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11950Os.47801.1.S1_at11/115+6803879..6806595GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g11960OsAffx.14649.1.S1_at10/115+6812438..6815681hypothetical protein
LOC_Os05g11970Os.9452.1.S1_s_at10/115+6818108..6822064GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g11980Os.56612.1.A1_x_at11/115+6822780..6832253Timeless protein, expressed
LOC_Os05g11980OsAffx.14650.1.S1_x_at11/115+6822780..6832253Timeless protein, expressed
LOC_Os05g11990Os.27071.1.S1_at11/115+6837971..6841909thioredoxin family protein, putative, expressed
LOC_Os05g12000OsAffx.4308.1.S1_at11/115+6843361..6843822hypothetical protein
LOC_Os05g12010OsAffx.14651.1.S1_at8/115+6846473..6847556hypothetical protein
LOC_Os05g12010Os.50506.1.S1_at7/115+6846473..6847556hypothetical protein
LOC_Os05g12020NANA5+6853142..6854296hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042752biological_processregulation of circadian rhythm
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14650.1.S1_x_at--173--7691Chr05:6824266..6824290 (25 bp)
GGGTTTCTCACCTAGTACATCACAG
LOC_Os05g11980
OsAffx.14650.1.S1_x_at--1079--351Chr05:6824240..6824264 (25 bp)
ATCAAGATGGTTTGGCAGACCCGGA
LOC_Os05g11980
OsAffx.14650.1.S1_x_at--484--5811Chr05:6824223..6824247 (25 bp)
GACCCGGATTCTGATGATGAGACCA
LOC_Os05g11980
OsAffx.14650.1.S1_x_at--818--5351Chr05:6824044..6824068 (25 bp)
GAAGAGGCTGTTGACGCCGGACAAT
LOC_Os05g11980
OsAffx.14650.1.S1_x_at--63--7111Chr05:6823993..6824017 (25 bp)
GTCACCAGACAGTACAAACACCAGT
LOC_Os05g11980
OsAffx.14650.1.S1_x_at--873--5411Chr05:6823938..6823962 (25 bp)
GAAGCCCTGCAAGACACTTATTCTG
LOC_Os05g11980
OsAffx.14650.1.S1_x_at--928--9472Chr06:5173316..5173343 (25 bp)
TCTGCACCATGGATTAAATTCGTCT
LOC_Os06g10118
OsAffx.14650.1.S1_x_at--932--10611Chr05:6822963..6822987 (25 bp)
TTCGTCTAATAACAGTGGCGGTGCT
LOC_Os05g11980
OsAffx.14650.1.S1_x_at--282--7991Chr05:6822921..6822945 (25 bp)
GGATGACTTCATTGAGCCTGAGCTA
LOC_Os05g11980
OsAffx.14650.1.S1_x_at--261--5871Chr05:6822908..6822932 (25 bp)
GAGCCTGAGCTAGATAACGTTGAAA
LOC_Os05g11980
OsAffx.14650.1.S1_x_at--11--3511Chr05:6822834..6822858 (25 bp)
CATGGAAAGCTCTTTTGCTGATCAA
LOC_Os05g11980
Target Sequence 
GGGTTTCTCACCTAGTACATCACAGCATCAAGATGGTTTGGCAGACCCGGATTCTGATGATGAGACCATAGGATCTATGC
TCAGAAGTGGAAAAAAGAAGAGGCTGTTGACGCCGGACAATGCAATGAATATAGAGAAACATCAGGAGTCACCAGACAGT
ACAAACACCAGTAATTATTCACCGGAAATATCTCAAAAACAAGAAGCCCTGCAAGACACTTATTCTGGTGATGAGATCAT
AGACTCTATGCATAGAAGTGGGAAAAAGAAGAGGTTATTGAAGTCAGGTTTTGCAGCAAATACACAAGAACATGAAGAGC
CTTTGAAAAACATAGGTCAAGACGATGAAACTATCAGTTCTAAGGATAATCTGCACCATGGATTAAATTCGTCTAATAAC
AGTGGCGGTGCTGGTGAAACAGAACTTTTGGATGACTTCATTGAGCCTGAGCTAGATAACGTTGAAAATACTGAGCAAAG
GGTAATCGATGATATAAATATCACCGAATCTGGGGACATGGAAAGCTCTTTTGCTGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14650.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis