Browse Element(s) Details


Os.47801.1.S1_at

Description gb:AK122049.1
DB_XREF= gi:37991695
TID=Os.47801.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47801 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114D08, full insert sequence.
FL= gb:AK122049.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1195011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11950Os.47801.1.S1_at11/115+6803879..6806595GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g11960OsAffx.14649.1.S1_at10/115+6812438..6815681hypothetical protein
LOC_Os05g11970Os.9452.1.S1_s_at10/115+6818108..6822064GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g11980Os.56612.1.A1_x_at11/115+6822780..6832253Timeless protein, expressed
LOC_Os05g11980OsAffx.14650.1.S1_x_at11/115+6822780..6832253Timeless protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47801.1.S1_at--921--3251Chr05:6806069..6806093 (25 bp)
CAACTACAACATGAGCGCGTCGTGC
LOC_Os05g11950
Os.47801.1.S1_at--57--5811Chr05:6806127..6806151 (25 bp)
GACGCTCACGTCAGCTGGGACGGCA
LOC_Os05g11950
Os.47801.1.S1_at--141--10551Chr05:6806178..6806202 (25 bp)
TTCATCGCCAACACCTGGATCAGGG
LOC_Os05g11950
Os.47801.1.S1_at--328--9331Chr05:6806224..6806248 (25 bp)
TCGCCAGCGTTGTCCGCGACGACAT
LOC_Os05g11950
Os.47801.1.S1_at--496--4591Chr05:6806239..6806263 (25 bp)
GCGACGACATGGTCTATTAGATTAC
LOC_Os05g11950
Os.47801.1.S1_at--940--1251Chr05:6806257..6806281 (25 bp)
AGATTACAGGTGATGATGACCTCCA
LOC_Os05g11950
Os.47801.1.S1_at--188--6511Chr05:6806325..6806349 (25 bp)
GATATGGCGTATGGACTTGCCTTGA
LOC_Os05g11950
Os.47801.1.S1_at--1003--2051Chr05:6806339..6806363 (25 bp)
ACTTGCCTTGAGTCGAGTTGGGTTG
LOC_Os05g11950
Os.47801.1.S1_at--275--6011Chr05:6806430..6806454 (25 bp)
GAGAGCTAACGTGCATTCCATTTGT
LOC_Os05g11950
Os.47801.1.S1_at--38--6811Chr05:6806538..6806562 (25 bp)
GTTTTGGTGCCATGTAATACTGCCT
LOC_Os05g11950
Os.47801.1.S1_at--876--3091Chr05:6806553..6806577 (25 bp)
AATACTGCCTACTACTTGGTCATAA
LOC_Os05g11950
Target Sequence 
CAACTACAACATGAGCGCGTCGTGCGGGCTCCCCGGCGCGACGACGTGCGAGGATCCCGACGCTCACGTCAGCTGGGACG
GCATCCACCTCACCGAGGCGCCCTACCGCTTCATCGCCAACACCTGGATCAGGGGCCCCTACGCCCACCCTCCCCTCGCC
AGCGTTGTCCGCGACGACATGGTCTATTAGATTACAGGTGATGATGACCTCCATGTTTTTTTTTCAATTTTTGGATCACC
AGAGATGAAGAAGAAGGATATGGCGTATGGACTTGCCTTGAGTCGAGTTGGGTTGGACTGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTAACGTGCATTCCATTTGTTGTTGGTGTATATTGG
CATAAGTAAATCGATTAGATTTTTAAATTTCTTTTTTGTTTTATTTTGTTTTTTAAAAAATTGGGCGGTTTTGGTGCCAT
GTAATACTGCCTACTACTTGGTCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis