Browse Element(s) Details


Os.56612.1.A1_x_at

Description gb:AK110207.1
DB_XREF= gi:32995416
TID=Os.56612.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56612 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-162-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-162-C04, full insert sequence.
FL= gb:AK110207.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1198011/11Timeless protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11950Os.47801.1.S1_at11/115+6803879..6806595GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g11960OsAffx.14649.1.S1_at10/115+6812438..6815681hypothetical protein
LOC_Os05g11970Os.9452.1.S1_s_at10/115+6818108..6822064GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g11980Os.56612.1.A1_x_at11/115+6822780..6832253Timeless protein, expressed
LOC_Os05g11980OsAffx.14650.1.S1_x_at11/115+6822780..6832253Timeless protein, expressed
LOC_Os05g11990Os.27071.1.S1_at11/115+6837971..6841909thioredoxin family protein, putative, expressed
LOC_Os05g12000OsAffx.4308.1.S1_at11/115+6843361..6843822hypothetical protein
LOC_Os05g12010OsAffx.14651.1.S1_at8/115+6846473..6847556hypothetical protein
LOC_Os05g12010Os.50506.1.S1_at7/115+6846473..6847556hypothetical protein
LOC_Os05g12020NANA5+6853142..6854296hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042752biological_processregulation of circadian rhythm
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56612.1.A1_x_at--808--2551Chr05:6828272..6828296 (25 bp)
AACTGCCTGAGGCTTCTCCTAGCGA
LOC_Os05g11980
Os.56612.1.A1_x_at--56--6471Chr05:6828237..6828261 (25 bp)
GATAATCTGCCGTTTCTTGGTGACA
LOC_Os05g11980
Os.56612.1.A1_x_at--809--7851Chr05:6828180..6828204 (25 bp)
GGTATGTTTAACTTGGTCATCTCCA
LOC_Os05g11980
Os.56612.1.A1_x_at--694--2071Chr05:6828170..6828194 (25 bp)
ACTTGGTCATCTCCAGGTGGCGTGA
LOC_Os05g11980
Os.56612.1.A1_x_at--1116--2211Chr05:6828113..6828137 (25 bp)
ACAAGACTCTTTCAGCAGCTGGGTC
LOC_Os05g11980
Os.56612.1.A1_x_at--467--9651Chr05:6828102..6828126 (25 bp)
TCAGCAGCTGGGTCTCTAATGAAGA
LOC_Os05g11980
Os.56612.1.A1_x_at--1025--7771Chr05:6827794..6827818 (25 bp)
GGTGCTTAAAGTACTTCCTGATGAT
LOC_Os05g11980
Os.56612.1.A1_x_at--846--5951Chr05:6827765..6827789 (25 bp)
GAGAATCTCAAACAGCTCGTGTTTT
LOC_Os05g11980
Os.56612.1.A1_x_at--1029--2871Chr05:6827708..6827732 (25 bp)
AAGGGCTCACTCAATTTCTGCTGAA
LOC_Os05g11980
Os.56612.1.A1_x_at--211--5511Chr05:6827378..6827402 (25 bp)
GAACAATCCATATCATGCTACAGCT
LOC_Os05g11980
Os.56612.1.A1_x_at--270--5971Chr05:6827349..6827373 (25 bp)
GAGAAGCTTCAAGCACGTGGTGCAT
LOC_Os05g11980
Target Sequence 
AACTGCCTGAGGCTTCTCCTAGCGATCANNTTGATGATAATCTGCCGTTTCTTGGTGACATATGCGGACCNGTTNNAGCC
ACATTGAATGAAGGTATGTTTAACTTGGTCATCTCCAGGTGGCGTGAGNCCTATGATAGCCTNAAGGAAACACATGATNA
CAAGACTCTTTCAGCAGCTGGGTCTCTAATGAAGANCATGATTGACATGGTATATTTGGTGCTTAAAGTACTTCCTGATG
ATTCAAGAGAATCTCAAACAGCTCGTGTTTTACNGTATAAGCTGTTTTATGATCAGACNGAACAAGGGCTCACTCAATTT
CTGCTGAACTTATTCAGATCATTTGATACTCATAAGCNAACCAAAAAGTGATCTTGCAGATTTNCTAGGAACAATCCATA
TCATGCTACAGCTCATGGAGAAGCTTCAAGCACGTGGTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56612.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis