Browse Element(s) Details


OsAffx.14651.1.S1_at

Description tigr:9633.m01069
TID=OsAffx.14651.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g120108/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11970Os.9452.1.S1_s_at10/115+6818108..6822064GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g11980Os.56612.1.A1_x_at11/115+6822780..6832253Timeless protein, expressed
LOC_Os05g11980OsAffx.14650.1.S1_x_at11/115+6822780..6832253Timeless protein, expressed
LOC_Os05g11990Os.27071.1.S1_at11/115+6837971..6841909thioredoxin family protein, putative, expressed
LOC_Os05g12000OsAffx.4308.1.S1_at11/115+6843361..6843822hypothetical protein
LOC_Os05g12010OsAffx.14651.1.S1_at8/115+6846473..6847556hypothetical protein
LOC_Os05g12010Os.50506.1.S1_at7/115+6846473..6847556hypothetical protein
LOC_Os05g12020NANA5+6853142..6854296hypothetical protein
LOC_Os05g12030OsAffx.14652.1.S1_at10/115+6857532..6861575expressed protein
LOC_Os05g12040Os.22935.1.S1_at11/115+6861987..6864191Cytochrome P450 51, putative, expressed
LOC_Os05g12050NANA5+6868384..6868677hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14651.1.S1_at--171--10431Chr05:6846511..6846535 (25 bp)
TTATGTCGCCGGAGTTGTAGAAGAA
LOC_Os05g12010
OsAffx.14651.1.S1_at--554--6171Chr05:6846555..6846579 (25 bp)
GAGGATGCCTATTGGACGAGGCTCA
LOC_Os05g12010
OsAffx.14651.1.S1_at--946--6351Chr05:6846558..6846582 (25 bp)
GATGCCTATTGGACGAGGCTCACTG
LOC_Os05g12010
OsAffx.14651.1.S1_at--764--10231Chr05:6846564..6846588 (25 bp)
TATTGGACGAGGCTCACTGGCGTCA
LOC_Os05g12010
OsAffx.14651.1.S1_at--1100--4811Chr05:6846575..6846599 (25 bp)
GCTCACTGGCGTCATTGGCGACTTC
LOC_Os05g12010
OsAffx.14651.1.S1_at--528--1951Chr05:6846579..6846603 (25 bp)
ACTGGCGTCATTGGCGACTTCTGGT
LOC_Os05g12010
OsAffx.14651.1.S1_at--324--4651Chr05:6846583..6846603 (21 bp)
GCGTCATTGGCGACTTCTGGTTATG
LOC_Os05g12010
OsAffx.14651.1.S1_at--796--7131Chr05:6846585..6846857 (25 bp)
GTCATTGGCGACTTCTGGTTATGAA
LOC_Os05g12010
OsAffx.14651.1.S1_at--1044--3591NONE
CATTGGCGACTTCTGGTTATGAACT
NONE
OsAffx.14651.1.S1_at--538--10871NONE
TTGGCGACTTCTGGTTATGAACTAC
NONE
OsAffx.14651.1.S1_at--316--8391NONE
GGCGACTTCTGGTTATGAACTACCA
NONE
Target Sequence 
TTATGTCGCCGGAGTTGTAGAAGAAGAACAACAAAGAGGAGAGAGAGGATGCCTATTGGACGAGGCTCACTGGCGTCATT
GGCGACTTCTGGTTATGAACTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis