Browse Element(s) Details


Os.50506.1.S1_at

Description gb:AK121499.1
DB_XREF= gi:37991122
TID=Os.50506.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50506 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033014J07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033014J07, full insert sequence.
FL= gb:AK121499.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g120107/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11970Os.9452.1.S1_s_at10/115+6818108..6822064GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g11980Os.56612.1.A1_x_at11/115+6822780..6832253Timeless protein, expressed
LOC_Os05g11980OsAffx.14650.1.S1_x_at11/115+6822780..6832253Timeless protein, expressed
LOC_Os05g11990Os.27071.1.S1_at11/115+6837971..6841909thioredoxin family protein, putative, expressed
LOC_Os05g12000OsAffx.4308.1.S1_at11/115+6843361..6843822hypothetical protein
LOC_Os05g12010OsAffx.14651.1.S1_at8/115+6846473..6847556hypothetical protein
LOC_Os05g12010Os.50506.1.S1_at7/115+6846473..6847556hypothetical protein
LOC_Os05g12020NANA5+6853142..6854296hypothetical protein
LOC_Os05g12030OsAffx.14652.1.S1_at10/115+6857532..6861575expressed protein
LOC_Os05g12040Os.22935.1.S1_at11/115+6861987..6864191Cytochrome P450 51, putative, expressed
LOC_Os05g12050NANA5+6868384..6868677hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50506.1.S1_at--700--5532Chr05:8483273..8483297 (25 bp)
GAAACAACTTAGATGCATCCAAACA
NONE
Os.50506.1.S1_at--366--3252Chr05:8483327..8483351 (25 bp)
CAACCTGAAGGGTAGAGTCACCCAT
NONE
Os.50506.1.S1_at--782--7031Chr05:8483392..8483416 (25 bp)
GTAAATCAACATGTACCAGACCTTT
NONE
Os.50506.1.S1_at--301--371Chr05:8483419..8483443 (25 bp)
ATAATTCTGTATCATTTGCCTGCAC
NONE
Os.50506.1.S1_at--594--10351Chr05:8483474..8483498 (25 bp)
TTTATCATTAATGCCTTTCAGGAAT
NONE
Os.50506.1.S1_at--1151--6432Chr05:8483528..8483552 (25 bp)
GATCAGAATTACTACCACTTATGCC
NONE
Os.50506.1.S1_at--268--1691Chr05:8483541..8483565 (25 bp)
ACCACTTATGCCATTAGGCTTTAAG
NONE
Os.50506.1.S1_at--982--8492Chr05:8483588..8483612 (25 bp)
TGGCAGCATGCGTTGAATAATTCCT
NONE
Os.50506.1.S1_at--829--5233Chr08:2011129..2011153 (25 bp)
GAATAATTCCTCCTAAGGCCACAAA
NONE
Os.50506.1.S1_at--83--2412Chr05:8483625..8483649 (25 bp)
AAACAATTGGCCTTCCCAGTTTGAT
NONE
Os.50506.1.S1_at--827--1193Chr05:8483716..8483740 (25 bp)
AGTATTTACCATTTTTGTCATTGAT
NONE
Target Sequence 
GAAACAACTTAGATGCATCCAAACAATGCTAGCAATGCTCTTAATGGGGAGCAGCAACCTGAAGGGTAGAGTCACCCATA
TNTTCTGGTATATTTTTTATAATGGAAATGTGTTAAGGGGTAAATCAACATGTACCAGACCTTTAGATAATTCTGTATCA
TTTGCCTGCACAATGCAAATCATGAAAATTTTGCTGTAATTTTTATCATTAATGCCTTTCAGGAATTTAGGATGAGTTCA
GGAAGTCATAAGATTGATCAGAATTACTACCACTTATGCCATTAGGCTTTAAGTTTATATGGAAGGGGTGTGGATTGGCA
GCATGCGTTGAATAATTCCTCCTAAGGCCACAAAACAATTGGCCTTCCCAGTTTGATTGATTGGTGGTCCAAGGATGAAA
GGCAATTACAATTTTGTATATGGAGTTTTTTCTTTGAATTTTCAGTATTTACCATTTTTGTCATTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis