Browse Element(s) Details


OsAffx.14652.1.S1_at

Description tigr:9633.m01070
TID=OsAffx.14652.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1203010/11expressed protein
LOC_Os06g143241/11Calcium binding EF-hand protein, putative, expressed
LOC_Os03g269401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11990Os.27071.1.S1_at11/115+6837971..6841909thioredoxin family protein, putative, expressed
LOC_Os05g12000OsAffx.4308.1.S1_at11/115+6843361..6843822hypothetical protein
LOC_Os05g12010OsAffx.14651.1.S1_at8/115+6846473..6847556hypothetical protein
LOC_Os05g12010Os.50506.1.S1_at7/115+6846473..6847556hypothetical protein
LOC_Os05g12020NANA5+6853142..6854296hypothetical protein
LOC_Os05g12030OsAffx.14652.1.S1_at10/115+6857532..6861575expressed protein
LOC_Os05g12040Os.22935.1.S1_at11/115+6861987..6864191Cytochrome P450 51, putative, expressed
LOC_Os05g12050NANA5+6868384..6868677hypothetical protein
LOC_Os05g12060Os.46012.3.S1_x_at6/115+6873922..6879579retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g12060Os.46012.2.S1_x_at6/115+6873922..6879579retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g12060Os.27088.1.A1_x_at4/115+6873922..6879579retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g12060Os.54691.1.S1_x_at1/115+6873922..6879579retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g12070NANA5+6883419..6883667retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005509molecular_functioncalcium ion binding
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14652.1.S1_at--921--8551NONE
TGGAGGTGGCCTGCATTATGCTCCA
NONE
OsAffx.14652.1.S1_at--423--151Chr05:6860033..6860054 (22 bp)
ATTATGCTCCAGCTGGTGTTCCGGA
LOC_Os05g12030
OsAffx.14652.1.S1_at--320--7671Chr05:6860653..6860673 (21 bp)
GGGTCAGAACAAAAGGCTTCCGCAT
LOC_Os05g12030
OsAffx.14652.1.S1_at--770--7131Chr05:6861250..6861275 (25 bp)
GTCATTGAAATTTAGGCACCCGTAT
LOC_Os05g12030
OsAffx.14652.1.S1_at--515--9316Chr12:8766905..8766929 (25 bp)
AGGCACCCGTATCAAGCTAAATTTG
NONE
OsAffx.14652.1.S1_at--497--7051Chr05:6861301..6861325 (25 bp)
GTAAAACAAGCAAGTGGCTCCGCCC
LOC_Os05g12030
OsAffx.14652.1.S1_at--16--9311Chr05:6861319..6861343 (25 bp)
TCCGCCCCTGCTTAAGAGAAGCCAT
LOC_Os05g12030
OsAffx.14652.1.S1_at--610--7231Chr05:6861390..6861414 (25 bp)
GTCGCGGTCCGAAGCTTGCAATGCA
LOC_Os05g12030
OsAffx.14652.1.S1_at--53--10751Chr05:6861405..6861429 (25 bp)
TTGCAATGCAGAGCCATCCACCGGG
LOC_Os05g12030
OsAffx.14652.1.S1_at--967--9491Chr05:6861495..6861519 (25 bp)
TCTCCTTTCTCCTTGCTTGAAGCAA
LOC_Os05g12030
OsAffx.14652.1.S1_at--820--5371Chr05:6861513..6861537 (25 bp)
GAAGCAATGCTTGACCGCGTGACAC
LOC_Os05g12030
Target Sequence 
TGGAGGTGGCCTGCATTATGCTCCAGCTGGTGTTCCGGAGCAGCAAGATCCGACGGGCGATGGCGGAGGCCAAGGATGGC
AAGCTGGCGCCGGCCTCCACGGCACGCCGGGCAGCGCGGCGGTGTTCGAGCTCACCGCCAAGTTCTGCTACGGCGTCAGC
GTCGACGGTGGGGTCAGAACAAAAGGCTTCCGCATACAGAAACAGAGTTACAGATTGTCATTGAAATTTAGGCACCCGTA
TCAAGCTAAATTTGATTCAAACCAGAGTAAAACAAGCAAGTGGCTCCGCCCCTGCTTAAGAGAAGCCATCCCCATCACGC
CGTTGCCCATCGGGGGAACTCAGCTCCCTTGCGGAGTCGCGGTCCGAAGCTTGCAATGCAGAGCCATCCACCGGGGGGCA
GACTTCATGGTGGAGCTGTGCTGGAGCTACGGCGTCGTCGCCGATTACGCTGCTTCTGCCTCTCCTTTCTCCTTGCTTGA
AGCAATGCTTGACCGCGTGACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis