Browse Element(s) Details


Os.22935.1.S1_at

Description gb:AK107185.1
DB_XREF= gi:32992394
TID=Os.22935.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22935 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-H08, full insert sequence.
FL= gb:AK107185.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1204011/11Cytochrome P450 51, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11990Os.27071.1.S1_at11/115+6837971..6841909thioredoxin family protein, putative, expressed
LOC_Os05g12000OsAffx.4308.1.S1_at11/115+6843361..6843822hypothetical protein
LOC_Os05g12010OsAffx.14651.1.S1_at8/115+6846473..6847556hypothetical protein
LOC_Os05g12010Os.50506.1.S1_at7/115+6846473..6847556hypothetical protein
LOC_Os05g12020NANA5+6853142..6854296hypothetical protein
LOC_Os05g12030OsAffx.14652.1.S1_at10/115+6857532..6861575expressed protein
LOC_Os05g12040Os.22935.1.S1_at11/115+6861987..6864191Cytochrome P450 51, putative, expressed
LOC_Os05g12050NANA5+6868384..6868677hypothetical protein
LOC_Os05g12060Os.46012.3.S1_x_at6/115+6873922..6879579retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g12060Os.46012.2.S1_x_at6/115+6873922..6879579retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g12060Os.27088.1.A1_x_at4/115+6873922..6879579retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g12060Os.54691.1.S1_x_at1/115+6873922..6879579retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g12070NANA5+6883419..6883667retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0016126biological_processsterol biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0008398molecular_functionsterol 14-demethylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22935.1.S1_at--863--6211Chr05:6862331..6862355 (25 bp)
GAGGCGTTCGCGTACATGCAGATCA
LOC_Os05g12040
Os.22935.1.S1_at--147--1771Chr05:6862291..6862315 (25 bp)
ACCTGCTGCGCAACTTCGAGCTGCA
LOC_Os05g12040
Os.22935.1.S1_at--57--2531Chr05:6862280..6862304 (25 bp)
AACTTCGAGCTGCAGCTGGTGTCGC
LOC_Os05g12040
Os.22935.1.S1_at--233--9331Chr05:6862259..6862283 (25 bp)
TCGCCGTTCCCGGAGACGGACTGGA
LOC_Os05g12040
Os.22935.1.S1_at--365--1911Chr05:6862244..6862268 (25 bp)
ACGGACTGGACCGTCGTCATGCCGG
LOC_Os05g12040
Os.22935.1.S1_at--480--8591Chr05:6862201..6862225 (25 bp)
TGGTCACTTACAACAGGAGGAAACT
LOC_Os05g12040
Os.22935.1.S1_at--816--8151Chr05:6862183..6862207 (25 bp)
GGAAACTTACCTAGTTATTATCAGT
LOC_Os05g12040
Os.22935.1.S1_at--1140--2551Chr05:6862155..6862179 (25 bp)
AACTGGAGGTATAATCATCGTATGT
LOC_Os05g12040
Os.22935.1.S1_at--271--3551Chr05:6862140..6862164 (25 bp)
CATCGTATGTGTTTAAGCATGTGTA
LOC_Os05g12040
Os.22935.1.S1_at--823--3551Chr05:6862112..6862136 (25 bp)
CATCTCATCATGTATTCTCAACTAG
LOC_Os05g12040
Os.22935.1.S1_at--235--7031Chr05:6862088..6862112 (25 bp)
GTACATAACTCATATCTATCTCTAT
LOC_Os05g12040
Target Sequence 
GAGGCGTTCGCGTACATGCAGATCAAGGTGATATGGAGCCACCTGCTGCGCAACTTCGAGCTGCAGCTGGTGTCGCCGTT
CCCGGAGACGGACTGGACCGTCGTCATGCCGGGGCCCAAGGGGAAGGTCATGGTCACTTACAACAGGAGGAAACTTACCT
AGTTATTATCAGTTAAAACTGGAGGTATAATCATCGTATGTGTTTAAGCATGTGTAAAACATCTCATCATGTATTCTCAA
CTAGTACATAACTCATATCTATCTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis