Browse Element(s) Details


OsAffx.14649.1.S1_at

Description tigr:9633.m01064
TID=OsAffx.14649.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1196010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11950Os.47801.1.S1_at11/115+6803879..6806595GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g11960OsAffx.14649.1.S1_at10/115+6812438..6815681hypothetical protein
LOC_Os05g11970Os.9452.1.S1_s_at10/115+6818108..6822064GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g11980Os.56612.1.A1_x_at11/115+6822780..6832253Timeless protein, expressed
LOC_Os05g11980OsAffx.14650.1.S1_x_at11/115+6822780..6832253Timeless protein, expressed
LOC_Os05g11990Os.27071.1.S1_at11/115+6837971..6841909thioredoxin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14649.1.S1_at--1018--7711NONE
GGGTGGCAGCACCATGCCATCCATG
NONE
OsAffx.14649.1.S1_at--521--591Chr05:6812974..6812998 (25 bp)
ATGCCATCCATGACGGTGCAATCGG
LOC_Os05g11960
OsAffx.14649.1.S1_at--207--691Chr05:6812965..6812989 (25 bp)
ATGACGGTGCAATCGGCCGGCATGA
LOC_Os05g11960
OsAffx.14649.1.S1_at--618--4991Chr05:6812946..6812970 (25 bp)
GCATGAAGAGGCTTCTCCGCGACAT
LOC_Os05g11960
OsAffx.14649.1.S1_at--15--4051Chr05:6812886..6812910 (25 bp)
CGATCACTGGGCGTGTCGCCAAGAA
LOC_Os05g11960
OsAffx.14649.1.S1_at--1038--3191Chr05:6812867..6812891 (25 bp)
CAAGAAGTTTTCACGGCCATCCTCA
LOC_Os05g11960
OsAffx.14649.1.S1_at--8--4011Chr05:6812819..6812843 (25 bp)
CGTCGACGAGCCGATCATCAAGAAG
LOC_Os05g11960
OsAffx.14649.1.S1_at--708--6431Chr05:6812807..6812831 (25 bp)
GATCATCAAGAAGGGCACGCCGGTG
LOC_Os05g11960
OsAffx.14649.1.S1_at--806--7271Chr05:6812626..6812650 (25 bp)
GTGCGCGTATCCAGGGACCAAGTTA
LOC_Os05g11960
OsAffx.14649.1.S1_at--708--5851Chr05:6812611..6812635 (25 bp)
GACCAAGTTAAGGTGATCACGCCCA
LOC_Os05g11960
OsAffx.14649.1.S1_at--745--4111Chr05:6812547..6812571 (25 bp)
CGCATCCCACCAAGTCGAAGAGCAA
LOC_Os05g11960
Target Sequence 
GGGTGGCAGCACCATGCCATCCATGACGGTGCAATCGGCCGGCATGAAGAGGCTTCTCCGCGACATCGAGAGCAGGAGGA
CGCCGCCGGATCACCTCGCGCCGATCACTGGGCGTGTCGCCAAGAAGTTTTCACGGCCATCCTCACCATTCCTGGCCGGC
GCCGCCGGCGTCGACGAGCCGATCATCAAGAAGGGCACGCCGGTGAGCGTGCGCACCCGGGTCGGCAAGATCGGCGCGGG
GCTCAACCGCCACCTCGTGCTCCGGCTCGGCGCCGTCGTCGTGTCCGACGCCGACGAGGACGACGGCTTCCTCGACGTCG
TCTACAACGTCGGGTTCCCGCCCCACGATCCCTTCCGCCCCGTGCGCGTATCCAGGGACCAAGTTAAGGTGATCACGCCC
ACCGCCGCCGTCACCAACGCTGCCGCGCCGCCGCCGCCGCCGCATCCCACCAAGTCGAAGAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis