Browse Element(s) Details


Os.51903.1.S1_at

Description gb:AK064228.1
DB_XREF= gi:32974246
TID=Os.51903.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51903 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-G11, full insert sequence.
FL= gb:AK064228.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1011811/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10100Os.54648.1.S1_at11/116+5142279..5143535expressed protein
LOC_Os06g10109Os.16859.1.S1_at11/116+5157232..5164172expressed protein
LOC_Os06g10109Os.20998.1.S1_at10/116+5157232..5164172expressed protein
LOC_Os06g10118Os.52051.1.S1_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.52051.1.S1_x_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51903.1.S1_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51910.1.S1_x_at2/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51910.1.S1_at2/116+5166820..5178688expressed protein
LOC_Os06g10118OsAffx.14650.1.S1_x_at1/116+5166820..5178688expressed protein
LOC_Os06g10130Os.55254.1.S1_at11/116+5178776..5179749expressed protein
LOC_Os06g10140Os.49982.1.S1_at11/116+5185448..5187308expressed protein
LOC_Os06g10150OsAffx.15346.1.S1_at11/116+5194455..5194855hypothetical protein
LOC_Os06g10160Os.55624.1.S1_at11/116+5195740..5198449Protein kinase APK1A, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51903.1.S1_at--304--6791Chr06:5177932..5177956 (25 bp)
GTTAGTTATTTACACCCATCTCTAG
LOC_Os06g10118
Os.51903.1.S1_at--608--4331Chr06:5177947..5177971 (25 bp)
CCATCTCTAGTGGTCATACGGGTAG
LOC_Os06g10118
Os.51903.1.S1_at--251--4911Chr06:5178005..5178029 (25 bp)
GCTTCTCGAAACGAACCCCTAAATG
LOC_Os06g10118
Os.51903.1.S1_at--381--7391Chr06:5178032..5178056 (25 bp)
GTGAGGCCAATTACCCAACATATAA
LOC_Os06g10118
Os.51903.1.S1_at--138--7011Chr06:5178097..5178121 (25 bp)
GTACTGTTGTATTGCTGTGGAGTCA
LOC_Os06g10118
Os.51903.1.S1_at--1102--7511Chr06:5178113..5178137 (25 bp)
GTGGAGTCATTTCTCGGAGCATCAA
LOC_Os06g10118
Os.51903.1.S1_at--921--4951Chr06:5178131..5178155 (25 bp)
GCATCAATTGATTTTTCCACACGTG
LOC_Os06g10118
Os.51903.1.S1_at--169--1371Chr06:5178254..5178278 (25 bp)
AGAGCACATTCCATCTTCTAGGACT
LOC_Os06g10118
Os.51903.1.S1_at--553--431Chr06:5178266..5178290 (25 bp)
ATCTTCTAGGACTCTGCCTCTGTGT
LOC_Os06g10118
Os.51903.1.S1_at--115--4471Chr06:5178281..5178305 (25 bp)
GCCTCTGTGTACTCTCAGGATTTGT
LOC_Os06g10118
Os.51903.1.S1_at--116--4951Chr06:5178460..5178484 (25 bp)
GCATAACCTTATCATGGTTGCCATG
LOC_Os06g10118
Target Sequence 
GTTAGTTATTTACACCCATCTCTAGTGGTCATACGGGTAGTATTATCTCAGTTAATATGGATGAAAGATAAAAGCTTCTC
GAAACGAACCCCTAAATGTAGTGAGGCCAATTACCCAACATATAAAGGGGAGCGTCAATGTATTGGGAAGAAATAACAAC
TTTATGTACTGTTGTATTGCTGTGGAGTCATTTCTCGGAGCATCAATTGATTTTTCCACACGTGGAGAAAAAAACAAGCC
ACAACCAAAGTAAAAAGAGCCTGTATACTCTATATATATAAAAAAAAAACAGGTGTGCCTATATATATATATATGTGTAA
AAAGAGCACATTCCATCTTCTAGGACTCTGCCTCTGTGTACTCTCAGGATTTGTTTTTTTTTTTTAACGAAGGGTGTACA
TCTGAGTAATAAGCTTATGTTCTACAGTAGAAAAAGACTCAATTAAATCTCCAAAATTAACTGTTACTGTCAAATTTTGC
TTAAATCTAATAAGTGGATGGATACTACAAAAGTGTTGGTCAAAGATAGCATAACCTTATCATGGTTGCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis