Browse Element(s) Details


Os.54648.1.S1_at

Description gb:AK106373.1
DB_XREF= gi:32991582
TID=Os.54648.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54648 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-C12, full insert sequence.
FL= gb:AK106373.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1010011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10040NANA6+5117540..5117878hypothetical protein
LOC_Os06g10050NANA6+5120690..5121061hypothetical protein
LOC_Os06g10060OsAffx.23916.1.S1_at1/116+5124394..5124768hypothetical protein
LOC_Os06g10070OsAffx.4784.1.S1_at11/116+5128816..5129580expressed protein
LOC_Os06g10079NANA6+5133769..5134334NA
LOC_Os06g10090NANA6+5136169..5137893hypothetical protein
LOC_Os06g10100Os.54648.1.S1_at11/116+5142279..5143535expressed protein
LOC_Os06g10109Os.16859.1.S1_at11/116+5157232..5164172expressed protein
LOC_Os06g10109Os.20998.1.S1_at10/116+5157232..5164172expressed protein
LOC_Os06g10118Os.52051.1.S1_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.52051.1.S1_x_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51903.1.S1_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51910.1.S1_x_at2/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51910.1.S1_at2/116+5166820..5178688expressed protein
LOC_Os06g10118OsAffx.14650.1.S1_x_at1/116+5166820..5178688expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54648.1.S1_at--619--8171Chr06:5143108..5143132 (25 bp)
GGAACGCTCCCACAAGATGGTCATG
LOC_Os06g10100
Os.54648.1.S1_at--855--1311Chr06:5143122..5143146 (25 bp)
AGATGGTCATGGTTACGGCCTTGGC
LOC_Os06g10100
Os.54648.1.S1_at--813--5711Chr06:5143224..5143248 (25 bp)
GACTCTGAAGATTCACATCGCCCGA
LOC_Os06g10100
Os.54648.1.S1_at--1097--6111Chr06:5143280..5143304 (25 bp)
GAGTGGTCGAGTGCTACTTGTTTTT
LOC_Os06g10100
Os.54648.1.S1_at--798--2012Chr06:5143328..5143352 (25 bp)
ACTAAAGTGGTGTGCGTTTCATCCT
LOC_Os06g10100
Os.54648.1.S1_at--617--4311Chr06:5143350..5143374 (25 bp)
CCTTTTGCATTTTACGCTGGGAGAA
LOC_Os06g10100
Os.54648.1.S1_at--632--4011Chr06:5143375..5143399 (25 bp)
CGTACTCGGTACTCGGTAGTGCGGT
LOC_Os06g10100
Os.54648.1.S1_at--162--2991Chr06:5143413..5143437 (25 bp)
AATGTGCTTTGGGTTCGTGTTTGCT
LOC_Os06g10100
Os.54648.1.S1_at--681--6851Chr06:5143431..5143455 (25 bp)
GTTTGCTTCTCTCTTTGGAGTAGTG
LOC_Os06g10100
Os.54648.1.S1_at--567--1092Chr06:5154310..5154334 (25 bp)
AGTGTCTCGGTCAGTGGGCTGAACT
NONE
Os.54648.1.S1_at--1000--7571Chr06:5143467..5143491 (25 bp)
GGGCTGAACTGGATATCATCTCGTT
LOC_Os06g10100
Target Sequence 
GGAACGCTCCCACAAGATGGTCATGGTTACGGCCTTGGCGGTTGCCTTCTTCCTCGCCGTCCCGCTCGTCGTCGTCGTCG
ACGCATGTCCGCGTCGTGTCTTCGGCTGCGCCTGTTGACTCTGAAGATTCACATCGCCCGATCGCCGTGACCGAGTCCTG
CACTGGCGACACGAGTGGTCGAGTGCTACTTGTTTTTTTCTGTTTTCTTGAGGGCGTAATACTAAAGTGGTGTGCGTTTC
ATCCTTTTGCATTTTACGCTGGGAGAACGTACTCGGTACTCGGTAGTGCGGTGGTGTATGTACACAATGTGCTTTGGGTT
CGTGTTTGCTTCTCTCTTTGGAGTAGTGTCTCGGTCAGTGGGCTGAACTGGATATCATCTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis