Browse Element(s) Details


OsAffx.4784.1.S1_at

Description tigr:9634.m00981
TID=OsAffx.4784.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1007011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10010NANA6+5103666..5104193hypothetical protein
LOC_Os06g10020Os.56042.1.S1_at11/116+5105166..5105930expressed protein
LOC_Os06g10030NANA6+5108369..5108719hypothetical protein
LOC_Os06g10040NANA6+5117540..5117878hypothetical protein
LOC_Os06g10050NANA6+5120690..5121061hypothetical protein
LOC_Os06g10060OsAffx.23916.1.S1_at1/116+5124394..5124768hypothetical protein
LOC_Os06g10070OsAffx.4784.1.S1_at11/116+5128816..5129580expressed protein
LOC_Os06g10079NANA6+5133769..5134334NA
LOC_Os06g10090NANA6+5136169..5137893hypothetical protein
LOC_Os06g10100Os.54648.1.S1_at11/116+5142279..5143535expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4784.1.S1_at--1041--3891Chr06:5129025..5129049 (25 bp)
CGGCGGAACGGGTGCGGCGGTCGAT
LOC_Os06g10070
OsAffx.4784.1.S1_at--75--7331Chr06:5129212..5129236 (25 bp)
GTGCTTCTTGCGAATGCCCACGGCG
LOC_Os06g10070
OsAffx.4784.1.S1_at--739--4891Chr06:5129214..5129238 (25 bp)
GCTTCTTGCGAATGCCCACGGCGGC
LOC_Os06g10070
OsAffx.4784.1.S1_at--152--5891Chr06:5129251..5129275 (25 bp)
GAGCGCTTCGCCAAGGCGACCCTGA
LOC_Os06g10070
OsAffx.4784.1.S1_at--179--10651Chr06:5129257..5129281 (25 bp)
TTCGCCAAGGCGACCCTGATGGTGT
LOC_Os06g10070
OsAffx.4784.1.S1_at--1079--2931Chr06:5129263..5129287 (25 bp)
AAGGCGACCCTGATGGTGTCCCTCG
LOC_Os06g10070
OsAffx.4784.1.S1_at--443--9411Chr06:5129306..5129330 (25 bp)
TCGTCCTTTGCATCGCGGTCGGCAT
LOC_Os06g10070
OsAffx.4784.1.S1_at--1141--411Chr06:5129416..5129440 (25 bp)
ATCATCGGCGCCACAGTTGTCACCT
LOC_Os06g10070
OsAffx.4784.1.S1_at--542--4551Chr06:5129423..5129447 (25 bp)
GCGCCACAGTTGTCACCTTGTTCTT
LOC_Os06g10070
OsAffx.4784.1.S1_at--614--2931Chr06:5129452..5129476 (25 bp)
AAGGCGAAAAATGCGGATGCCGCCG
LOC_Os06g10070
OsAffx.4784.1.S1_at--583--3631Chr06:5129511..5129535 (25 bp)
CTTCCACAACCACAAGATGATCTTG
LOC_Os06g10070
Target Sequence 
CGGCGGAACGGGTGCGGCGGTCGATGACCCGTTCGCCAAGATGACGCTGGCGGTGTCCCTGGCCGTGGCCGTCCTCGTCT
CCGCCACCCTGATCCTCCTGCCGCTGTTCCAGTCCGGGGGCCTCGGCGCGCTCGCCTTCGCCGGAGCCGCGCTCGTCGTG
GGCGCCTGCGCCGCGCGCGCGCGCGGCGTGCTTCTTGCGAATGCCCACGGCGGCGCCCCCGCCACCGAGCGCTTCGCCAA
GGCGACCCTGATGGTGTCCCTCGCCGCCGTCTTCTCCCTCCTCGTCCTTTGCATCGCGGTCGGCATCCTCGACGCGCCTG
CGCAGCGCCTCCTTGCCTTCGCCTTCAAGAACCCACCCGCCACCGTGGCCGTCTGCGTCGCCACAGCCACCATCATCGGC
GCCACAGTTGTCACCTTGTTCTTCCGCAAGGCGAAAAATGCGGATGCCGCCGCCGCCGCCGCCCCAACGGCGATGGCCAT
GGCGCTCTTCCACAACCACAAGATGATCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis