Browse Element(s) Details


OsAffx.23916.1.S1_at

Description tigr:9629.m06414
TID=OsAffx.23916.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6474011/11hypothetical protein
LOC_Os06g100601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64700Os.18696.1.S1_at10/111+37862801..37866231Tubby protein, putative, expressed
LOC_Os01g64710NANA1+37868950..37869207hypothetical protein
LOC_Os01g64720Os.14322.2.S1_at11/111+37878839..37883345expressed protein
LOC_Os01g64720OsAffx.11732.2.S1_s_at11/111+37878839..37883345expressed protein
LOC_Os01g64720Os.14322.1.S1_at11/111+37878839..37883345expressed protein
LOC_Os01g64720Os.14322.2.S1_x_at11/111+37878839..37883345expressed protein
LOC_Os01g64730Os.411.1.S1_a_at11/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64730Os.411.1.S1_at11/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64730Os.5277.1.S1_at11/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64730Os.411.2.S1_x_at9/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64740OsAffx.23916.1.S1_at11/111+37888701..37890687hypothetical protein
LOC_Os01g64750Os.54156.1.S1_x_at11/111+37892903..37902840Glycosyltransferase family 28 N-terminal domain containing protein, expressed
LOC_Os01g64760Os.37593.3.S1_at11/111+37903736..37905956integral membrane Yip1 family protein, putative, expressed
LOC_Os01g64770Os.37593.1.S1_a_at11/111+37907424..37911685Polypyrimidine tract-binding protein homolog 3, putative, expressed
LOC_Os01g64780Os.10553.1.S1_s_at11/111+37911640..37914964transmembrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23916.1.S1_at--686--9252Chr06:5124669..5124693 (25 bp)
TCCTCACAGCTTAGGCGCTCAGCGT
LOC_Os06g10060
OsAffx.23916.1.S1_at--176--5031Chr01:37889900..37889924 (25 bp)
GCAGTGAGCTCCGTTATGCTAGCAT
LOC_Os01g64740
OsAffx.23916.1.S1_at--133--10431Chr01:37889887..37889911 (25 bp)
TTATGCTAGCATCGCTGACTATCCT
LOC_Os01g64740
OsAffx.23916.1.S1_at--879--6891Chr01:37889473..37889845 (25 bp)
GTATCTCCACTCCAGAGCCAAGGAC
LOC_Os01g64740
OsAffx.23916.1.S1_at--1121--9991Chr01:37889437..37889461 (25 bp)
TAGCTCGTCTTCCACTCAAGCTGAC
LOC_Os01g64740
OsAffx.23916.1.S1_at--365--6111Chr01:37889391..37889415 (25 bp)
GAGTGCACACTATCAACGGCGATAA
LOC_Os01g64740
OsAffx.23916.1.S1_at--354--9371Chr01:37889352..37889376 (25 bp)
TCGACTACGCCGTGCTTGGAGCTCA
LOC_Os01g64740
OsAffx.23916.1.S1_at--464--7331Chr01:37889341..37889365 (25 bp)
GTGCTTGGAGCTCACCACTGGTGCT
LOC_Os01g64740
OsAffx.23916.1.S1_at--468--3331Chr01:37889326..37889350 (25 bp)
CACTGGTGCTCATCGGTACGGAGGA
LOC_Os01g64740
OsAffx.23916.1.S1_at--383--7671Chr01:37888798..37888822 (25 bp)
GGGATAGCTACTGGCCGCCGCTACA
LOC_Os01g64740
OsAffx.23916.1.S1_at--984--4551Chr01:37888741..37888765 (25 bp)
GCGCCAAGTCATCGCGTTTTGCAGG
LOC_Os01g64740
Target Sequence 
TCCTCACAGCTTAGGCGCTCAGCGTCNNNNNNGTTCCTATTTGGATGGGANAGGTGGACGNAGGGTATCCCGTCGATACC
CTTCCCGANNGTATACCGGNNNNNNNACTGTCATCCTCGACTCCACCTCCGGCAGTGAGCTCCGTTATGCTAGCATCGCT
GACTATCCTCTACTCCACGACAACGGGCCTCCACCACCGGCCTCAACTCCGTATCTCCACTCCAGAGCCAAGGACCACGC
TTCCTCTAGCTCGTCTTCCACTCAAGCTGACGCCGTCTCCACCCAGCGTACCGAGTGCACACTATCAACGGCGATAAGAA
CAAGGGCAAGCTCGACTACGCCGTGCTTGGAGCTCACCACTGGTGCTCATCGGTACGGAGGAGATAAGGGGAAGAGAAAG
GAGGATAGGGAAATAGAGGAAGAAGGTGGCCGGGATAGCTACTGGCCGCCGCTACAGGACGAGGCGACGAAAAGGCAGCC
GGTGTCCGGCGCCAAGTCATCGCGTTTTGCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis