Browse Element(s) Details


OsAffx.11732.2.S1_s_at

Description tigr:9629.m06412
TID=OsAffx.11732.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=tyrosyl-tRNA synthetase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6472011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64690Os.8993.1.S1_at11/111+37854257..37855951U6 snRNA-associated Sm-like protein LSm3, putative, expressed
LOC_Os01g64700Os.18696.1.S1_at10/111+37862801..37866231Tubby protein, putative, expressed
LOC_Os01g64710NANA1+37868950..37869207hypothetical protein
LOC_Os01g64720Os.14322.2.S1_at11/111+37878839..37883345expressed protein
LOC_Os01g64720OsAffx.11732.2.S1_s_at11/111+37878839..37883345expressed protein
LOC_Os01g64720Os.14322.1.S1_at11/111+37878839..37883345expressed protein
LOC_Os01g64720Os.14322.2.S1_x_at11/111+37878839..37883345expressed protein
LOC_Os01g64730Os.411.1.S1_a_at11/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64730Os.411.1.S1_at11/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64730Os.5277.1.S1_at11/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64730Os.411.2.S1_x_at9/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64740OsAffx.23916.1.S1_at11/111+37888701..37890687hypothetical protein
LOC_Os01g64750Os.54156.1.S1_x_at11/111+37892903..37902840Glycosyltransferase family 28 N-terminal domain containing protein, expressed
LOC_Os01g64760Os.37593.3.S1_at11/111+37903736..37905956integral membrane Yip1 family protein, putative, expressed
LOC_Os01g64770Os.37593.1.S1_a_at11/111+37907424..37911685Polypyrimidine tract-binding protein homolog 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11732.2.S1_s_at--12--8851Chr01:37881815..37882026 (25 bp)
TGATCCTCGCAGGTGGTCAGCCTTG
LOC_Os01g64720
OsAffx.11732.2.S1_s_at--237--4131Chr01:37882010..37882033 (24 bp)
CGCAGGTGGTCAGCCTTGTCAAGAT
LOC_Os01g64720
OsAffx.11732.2.S1_s_at--734--8731Chr01:37882025..37882049 (25 bp)
TGTCAAGATGGGTTGGGTGCTCCAA
LOC_Os01g64720
OsAffx.11732.2.S1_s_at--358--7711Chr01:37882039..37882217 (25 bp)
GGGTGCTCCAAGTATGAGATTACAG
LOC_Os01g64720
OsAffx.11732.2.S1_s_at--731--6051Chr01:37882209..37882232 (24 bp)
GAGATTACAGGCCTTTCATTTTCAT
LOC_Os01g64720
OsAffx.11732.2.S1_s_at--630--8431Chr01:37882217..37882241 (25 bp)
GGCCTTTCATTTTCATCAGTTGATG
LOC_Os01g64720
OsAffx.11732.2.S1_s_at--314--5251Chr01:37882241..37882265 (25 bp)
GAATCTTTCATTTATGTCCAAGGTG
LOC_Os01g64720
OsAffx.11732.2.S1_s_at--453--9211Chr01:37882257..37882707 (25 bp)
TCCAAGGTGTTGATTATGAGATTAC
LOC_Os01g64720
OsAffx.11732.2.S1_s_at--1146--10231Chr01:37882716..37882740 (25 bp)
TTTGGAAGGGAAACGAGCGAGCTTT
LOC_Os01g64720
OsAffx.11732.2.S1_s_at--113--3891Chr01:37882762..37882956 (25 bp)
CTGGTTGGGTTTTTCAAAGTGTGCG
LOC_Os01g64720
OsAffx.11732.2.S1_s_at--41--7691Chr01:37882768..37882962 (25 bp)
GGGTTTTTCAAAGTGTGCGAATACA
LOC_Os01g64720
Target Sequence 
TGATCCTCGCAGGTGGTCAGCCTTGTCAAGATGGGTTGGGTGCTCCAAGTATGAGATTACAGGCCTTTCATTTTCATCAG
TTGATGAATCTTTCATTTATGTCCAAGGTGTTGATTATGAGATTACATGTGGACTTTGGAAGGGAAACGAGCGAGCTTTC
TCATTTCGAGGGGACTCCAACTGGTTGGGTTTTTCAAAGTGTGCGAATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11732.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis