Browse Element(s) Details


Os.411.1.S1_a_at

Description gb:U25283.1
DB_XREF= gi:1753084
TID=Os.411.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.411 (NCBI UniGene Cluster)
DEF=Oryza sativa clone OSE2 leucine zipper protein mRNA, complete cds.
PROD=leucine zipper protein
FL= gb:AK067919.1 gb:U25283.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6473011/11G-box binding factor 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64700Os.18696.1.S1_at10/111+37862801..37866231Tubby protein, putative, expressed
LOC_Os01g64710NANA1+37868950..37869207hypothetical protein
LOC_Os01g64720Os.14322.2.S1_at11/111+37878839..37883345expressed protein
LOC_Os01g64720OsAffx.11732.2.S1_s_at11/111+37878839..37883345expressed protein
LOC_Os01g64720Os.14322.1.S1_at11/111+37878839..37883345expressed protein
LOC_Os01g64720Os.14322.2.S1_x_at11/111+37878839..37883345expressed protein
LOC_Os01g64730Os.411.1.S1_a_at11/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64730Os.411.1.S1_at11/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64730Os.5277.1.S1_at11/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64730Os.411.2.S1_x_at9/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64740OsAffx.23916.1.S1_at11/111+37888701..37890687hypothetical protein
LOC_Os01g64750Os.54156.1.S1_x_at11/111+37892903..37902840Glycosyltransferase family 28 N-terminal domain containing protein, expressed
LOC_Os01g64760Os.37593.3.S1_at11/111+37903736..37905956integral membrane Yip1 family protein, putative, expressed
LOC_Os01g64770Os.37593.1.S1_a_at11/111+37907424..37911685Polypyrimidine tract-binding protein homolog 3, putative, expressed
LOC_Os01g64780Os.10553.1.S1_s_at11/111+37911640..37914964transmembrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009738biological_processabscisic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.411.1.S1_a_at--738--8151Chr01:37884071..37884095 (25 bp)
GGAAATGGTTGTTCCAGTCATCATT
LOC_Os01g64730
Os.411.1.S1_a_at--891--2291Chr01:37884069..37884093 (25 bp)
AAATGGTTGTTCCAGTCATCATTAG
LOC_Os01g64730
Os.411.1.S1_a_at--249--831Chr01:37884067..37884091 (25 bp)
ATGGTTGTTCCAGTCATCATTAGGA
LOC_Os01g64730
Os.411.1.S1_a_at--824--7911Chr01:37884065..37884089 (25 bp)
GGTTGTTCCAGTCATCATTAGGAAA
LOC_Os01g64730
Os.411.1.S1_a_at--525--7131Chr01:37884055..37884079 (25 bp)
GTCATCATTAGGAAAACGTCAGCAC
LOC_Os01g64730
Os.411.1.S1_a_at--1092--3551Chr01:37884053..37884077 (25 bp)
CATCATTAGGAAAACGTCAGCACGA
LOC_Os01g64730
Os.411.1.S1_a_at--1136--8151Chr01:37884045..37884069 (25 bp)
GGAAAACGTCAGCACGAGATCTTAG
LOC_Os01g64730
Os.411.1.S1_a_at--106--2591Chr01:37884041..37884065 (25 bp)
AACGTCAGCACGAGATCTTAGAAGA
LOC_Os01g64730
Os.411.1.S1_a_at--295--7111Chr01:37884038..37884062 (25 bp)
GTCAGCACGAGATCTTAGAAGAACA
LOC_Os01g64730
Os.411.1.S1_a_at--389--3651Chr01:37884025..37884049 (25 bp)
CTTAGAAGAACAAACTCGATGGAGT
LOC_Os01g64730
Os.411.1.S1_a_at--1099--2431Chr01:37884020..37884044 (25 bp)
AAGAACAAACTCGATGGAGTGGTAG
LOC_Os01g64730
Target Sequence 
GGAAATGGTTGTTCCAGTCATCATTAGGAAAACGTCAGCACGAGATCTTAGAAGAACAAACTCGATGGAGTGGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.411.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis