Browse Element(s) Details

Os.411.2.S1_x_at

Description

gb:NM_190762.1
DB_XREF= gi:34908607
GEN=P0677H08.4
TID=Os.411.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.411 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative DNA binding protein (P0677H08.4), mRNA.
PROD=putative DNA binding protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g64730	9/11	G-box binding factor 4, putative, expressed
LOC_Os05g36160	1/11	bZIP transcription factor family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g64700	Os.18696.1.S1_at	10/11	1	+	37862801..37866231	Tubby protein, putative, expressed
LOC_Os01g64710	NA	NA	1	+	37868950..37869207	hypothetical protein
LOC_Os01g64720	Os.14322.2.S1_at	11/11	1	+	37878839..37883345	expressed protein
LOC_Os01g64720	OsAffx.11732.2.S1_s_at	11/11	1	+	37878839..37883345	expressed protein
LOC_Os01g64720	Os.14322.1.S1_at	11/11	1	+	37878839..37883345	expressed protein
LOC_Os01g64720	Os.14322.2.S1_x_at	11/11	1	+	37878839..37883345	expressed protein
LOC_Os01g64730	Os.411.1.S1_a_at	11/11	1	+	37883523..37886953	G-box binding factor 4, putative, expressed
LOC_Os01g64730	Os.411.1.S1_at	11/11	1	+	37883523..37886953	G-box binding factor 4, putative, expressed
LOC_Os01g64730	Os.5277.1.S1_at	11/11	1	+	37883523..37886953	G-box binding factor 4, putative, expressed
LOC_Os01g64730	Os.411.2.S1_x_at	9/11	1	+	37883523..37886953	G-box binding factor 4, putative, expressed
LOC_Os01g64740	OsAffx.23916.1.S1_at	11/11	1	+	37888701..37890687	hypothetical protein
LOC_Os01g64750	Os.54156.1.S1_x_at	11/11	1	+	37892903..37902840	Glycosyltransferase family 28 N-terminal domain containing protein, expressed
LOC_Os01g64760	Os.37593.3.S1_at	11/11	1	+	37903736..37905956	integral membrane Yip1 family protein, putative, expressed
LOC_Os01g64770	Os.37593.1.S1_a_at	11/11	1	+	37907424..37911685	Polypyrimidine tract-binding protein homolog 3, putative, expressed
LOC_Os01g64780	Os.10553.1.S1_s_at	11/11	1	+	37911640..37914964	transmembrane protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006355	biological_process	regulation of transcription, DNA-dependent
GO:0006950	biological_process	response to stress
GO:0009414	biological_process	response to water deprivation
GO:0009651	biological_process	response to salt stress
GO:0009737	biological_process	response to abscisic acid stimulus
GO:0009738	biological_process	abscisic acid mediated signaling
GO:0010182	biological_process	sugar mediated signaling
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity
GO:0016563	molecular_function	transcriptional activator activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.411.2.S1_x_at--421--69	1	Chr01:37886190..37886214 (25 bp)	ATGACGCTGGAGGACTTTCTGGCGA	LOC_Os01g64730
Os.411.2.S1_x_at--477--537	1	Chr01:37886148..37886172 (25 bp)	GAAGACGAGGCTGTGGTCACCGATC	LOC_Os01g64730
Os.411.2.S1_x_at--750--619	1	Chr01:37886038..37886062 (25 bp)	GAGGCACCTGATGGATCCGATGGAC	LOC_Os01g64730
Os.411.2.S1_x_at--1145--505	2	Chr05:21350051..21350074 (24 bp)	GCAGCGGCAGAAGCGAATGATCAAA	LOC_Os05g36160
Os.411.2.S1_x_at--83--299	1	Chr01:37885987..37886011 (25 bp)	AATGATCAAAAATCGCGAGTCGGCG	LOC_Os01g64730
Os.411.2.S1_x_at--224--501	1	NONE	GCAGGCCTATATTGCTGAGCTCGAG	NONE
Os.411.2.S1_x_at--1137--413	1	Chr01:37885821..37885845 (25 bp)	CGCTGGTCACGCAACTCGAGGAGGA	LOC_Os01g64730
Os.411.2.S1_x_at--105--801	1	Chr01:37885018..37885042 (25 bp)	GGAGGAGCAACATCAGAAACGACTT	LOC_Os01g64730
Os.411.2.S1_x_at--1095--257	1	Chr01:37884844..37885025 (25 bp)	AACGACTTAAAGAGCCTTCATATAG	LOC_Os01g64730
Os.411.2.S1_x_at--287--143	1	NONE	AGAACACAATACTGGCTCAAGGAAA	NONE
Os.411.2.S1_x_at--739--815	1	Chr01:37884071..37884095 (25 bp)	GGAAATGGTTGTTCCAGTCATCATT	LOC_Os01g64730

Target Sequence

ATGACGCTGGAGGACTTTCTGGCGAGGGAGGGCGCGGTGAAGGAAGACGAGGCTGTGGTCACCGATCCCTCGGCGGCCAA
GGGGCAGGTGGTGATGGGGTTCCTGAACGGGGCAGAGGTCACCGGAGGCGTCACCGGCGGCAGGAGCAGGAAGAGGCACC
TGATGGATCCGATGGACCGCGCCGCGATGCAGCGGCAGAAGCGAATGATCAAAAATCGCGAGTCGGCGGCGAGGTCACGG
GAGAGGAAGCAGGCCTATATTGCTGAGCTCGAGTCGCTGGTCACGCAACTCGAGGAGGAGAACGCCAAGATGTTCAAAGA
ACAGGAGGAGCAACATCAGAAACGACTTAAAGAGCCTTCATATAGGAACATACAGTACAGAACACAATACTGGCTCAAGG
AAATGGTTGTTCCAGTCATCATT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis