Browse Element(s) Details


Os.54156.1.S1_x_at

Description gb:AK102226.1
DB_XREF= gi:32987435
TID=Os.54156.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54156 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033087N12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087N12, full insert sequence.
FL= gb:AK102226.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6475011/11Glycosyltransferase family 28 N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64710NANA1+37868950..37869207hypothetical protein
LOC_Os01g64720Os.14322.2.S1_at11/111+37878839..37883345expressed protein
LOC_Os01g64720OsAffx.11732.2.S1_s_at11/111+37878839..37883345expressed protein
LOC_Os01g64720Os.14322.1.S1_at11/111+37878839..37883345expressed protein
LOC_Os01g64720Os.14322.2.S1_x_at11/111+37878839..37883345expressed protein
LOC_Os01g64730Os.411.1.S1_a_at11/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64730Os.411.1.S1_at11/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64730Os.5277.1.S1_at11/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64730Os.411.2.S1_x_at9/111+37883523..37886953G-box binding factor 4, putative, expressed
LOC_Os01g64740OsAffx.23916.1.S1_at11/111+37888701..37890687hypothetical protein
LOC_Os01g64750Os.54156.1.S1_x_at11/111+37892903..37902840Glycosyltransferase family 28 N-terminal domain containing protein, expressed
LOC_Os01g64760Os.37593.3.S1_at11/111+37903736..37905956integral membrane Yip1 family protein, putative, expressed
LOC_Os01g64770Os.37593.1.S1_a_at11/111+37907424..37911685Polypyrimidine tract-binding protein homolog 3, putative, expressed
LOC_Os01g64780Os.10553.1.S1_s_at11/111+37911640..37914964transmembrane protein, putative, expressed
LOC_Os01g64790NANA1+37916627..37919295AP2 domain containing protein, expressed
LOC_Os01g64800NANA1+37921920..37922189hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54156.1.S1_x_at--313--151Chr01:37900938..37900962 (25 bp)
ATTTTGGAGGATTGCCCTCACGACT
LOC_Os01g64750
Os.54156.1.S1_x_at--881--9331Chr01:37900973..37901411 (25 bp)
TCGCTGTGCTGCAGTGGTACATCAT
LOC_Os01g64750
Os.54156.1.S1_x_at--1106--1611Chr01:37901444..37901769 (25 bp)
AGCTGGGTGCCCAACTACCATAGTG
LOC_Os01g64750
Os.54156.1.S1_x_at--288--131Chr01:37901806..37901830 (25 bp)
ATTCATGCACAAGGTGTTGGCCCTG
LOC_Os01g64750
Os.54156.1.S1_x_at--39--2491Chr01:37901849..37901873 (25 bp)
AACTTACTGTCGAGGCACTTTCAAA
LOC_Os01g64750
Os.54156.1.S1_x_at--416--6571Chr01:37901882..37901904 (23 bp)
GATTCATGCTTGATCCTGAGGTAAA
LOC_Os01g64750
Os.54156.1.S1_x_at--405--7531Chr01:37902451..37902475 (25 bp)
GTGGCAGCCGCAGTAGACTCATTTC
LOC_Os01g64750
Os.54156.1.S1_x_at--664--6951Chr01:37902463..37902487 (25 bp)
GTAGACTCATTTCATCGACATCTCC
LOC_Os01g64750
Os.54156.1.S1_x_at--775--3191Chr01:37902550..37902574 (25 bp)
CAATGGTTTTCACAAGCCCTTGAGA
LOC_Os01g64750
Os.54156.1.S1_x_at--266--5971Chr01:37902571..37902595 (25 bp)
GAGAAGTGTTGCTTCCCATTCAATC
LOC_Os01g64750
Os.54156.1.S1_x_at--324--4331Chr01:37902586..37902610 (25 bp)
CCATTCAATCCTTAGCTGTCCATAG
LOC_Os01g64750
Target Sequence 
ATTTTGGAGGATTGCCCTCACGACTGGCTGTTTCCTCGCTGTGCTGCAGTGGTACATCATGGTGGGGCTGGTACCACAGC
CGCGGGGCTTGTAGCTGGGTGCCCAACTACCATAGTGCCATTTTTTGGAGATCAATTCTTCTGGGGTGAGAGAATTCATG
CACAAGGTGTTGGCCCTGCACCTATTCCTATAGCAGAACTTACTGTCGAGGCACTTTCAAATGCTATAAGATTCATGCTT
GATCCTGAGGTAAAATCACGAACAATGGAACTGGCAATAGCAATTGGGAATGAAGATGGCGTGGCAGCCGCAGTAGACTC
ATTTCATCGACATCTCCCTGCCGAACTTCCGCTTGCCCCACCACCCACAGATGTAAAGGAAGAACAGCTAGACTTTTTTC
AATGGTTTTCACAAGCCCTTGAGAAGTGTTGCTTCCCATTCAATCCTTAGCTGTCCATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54156.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis